Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h14
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical pr...    39   0.004
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    32   0.36 
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      32   0.36 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.5  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U22831-13|AAM98013.1|  245|Caenorhabditis elegans G-protein-link...    28   7.8  
U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-link...    28   7.8  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    28   7.8  
U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-link...    28   7.8  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    28   7.8  
AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-lin...    28   7.8  
AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-lin...    28   7.8  

>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 48/81 (59%)
 Frame = +1

Query: 436 LRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCSRYFLHYPWVWGI 615
           LRK+  V+I+ +  +  +++F+K N+     LG+    +E LA+   +  F  +P   G+
Sbjct: 127 LRKLSLVVIIIRWGISINVRFIKKNYIFPPILGLGSAFSEALAICFTACVFFDFPLSLGL 186

Query: 616 LLGSIYASLSCAVVMPSVLKV 678
           + G + A++S AV MP+++++
Sbjct: 187 ICGFVVATVSPAVGMPTMIRL 207


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 48/81 (59%)
 Frame = +1

Query: 436 LRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCSRYFLHYPWVWGI 615
           LRK+  V+I+ +  +  +++F+K N+     LG+    +E LA+   +  F  +P   G+
Sbjct: 127 LRKLSLVVIIIRWGISINVRFIKKNYIFPPILGLGSAFSEALAICFTACVFFDFPLSLGL 186

Query: 616 LLGSIYASLSCAVVMPSVLKV 678
           + G + A++S AV MP+++++
Sbjct: 187 ICGFVVATVSPAVGMPTMIRL 207


>Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical
           protein F57G8.5 protein.
          Length = 498

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/85 (24%), Positives = 42/85 (49%)
 Frame = +1

Query: 418 PHVDNFLRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCSRYFLHY 597
           P  +  +RK+   +I+ +  L  D+KF+  N     ++G+V    E++A+   S   L  
Sbjct: 108 PFTETMIRKVALAMIVIRWGLATDVKFLYENAVTPVTIGLVTAIGEIIAITIASFLILDI 167

Query: 598 PWVWGILLGSIYASLSCAVVMPSVL 672
            +V  +    I   +S AV +P+++
Sbjct: 168 SFVMAVFCALILVIVSPAVTVPAMI 192


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -1

Query: 667 QRASPQHKTKMRR*TQGECPKPRDNGGSTASMSREREPQPSRVPHRG*KLDANWPS*ISS 488
           +R SP  + + +R +  + P  R    ST+ + R R P P+++P R  + D+  P    S
Sbjct: 491 RRRSPSPERQRKRRSPSDSPPTRRL--STSPIRRRRSPSPNKLPVRRRRHDSGSPDRDGS 548

Query: 487 PNPEM 473
            +P+M
Sbjct: 549 ESPKM 553


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -1

Query: 667 QRASPQHKTKMRR*TQGECPKPRDNGGSTASMSREREPQPSRVPHRG*KLDANWPS*ISS 488
           +R SP  + + +R +  + P  R    ST+ + R R P P+++P R  + D+  P    S
Sbjct: 491 RRRSPSPERQRKRRSPSDSPPTRRL--STSPIRRRRSPSPNKLPVRRRRHDSGSPDRDGS 548

Query: 487 PNPEM 473
            +P+M
Sbjct: 549 ESPKM 553


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 224 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 322
           GG+ G +G  GG G +NG N Q+   + G   N
Sbjct: 168 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 200


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 224 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 322
           GG+ G +G  GG G +NG N Q+   + G   N
Sbjct: 189 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 221


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 224 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 322
           GG+ G +G  GG G +NG N Q+   + G   N
Sbjct: 174 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 206


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 607 KPRDNGGSTASMSREREPQ-PSRVPHRG*KLDANWPS*ISSPNPEMTCQELS 455
           KP DNGGS A+ S  R  + P R+  R  +L ++  S  +S +P  + +++S
Sbjct: 799 KPMDNGGSVAASSTRRGSRTPRRLWRRARQLISSMSSSCASCSPLPSRRQVS 850


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 607 KPRDNGGSTASMSREREPQ-PSRVPHRG*KLDANWPS*ISSPNPEMTCQELS 455
           KP DNGGS A+ S  R  + P R+  R  +L ++  S  +S +P  + +++S
Sbjct: 802 KPMDNGGSVAASSTRRGSRTPRRLWRRARQLISSMSSSCASCSPLPSRRQVS 853


>U22831-13|AAM98013.1|  245|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform d protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


>U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform b protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


>U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform c protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


>AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2a protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


>AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-2c protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 520 VFSLGVVPWTAEVLALATCSRYFLHY-PWVWGILLGSIYASLSCAVVMPSVLKV-GTSPD 693
           +FSL +      +  +   + ++L+   W+WG +L  ++ S+   V + S+  V G + D
Sbjct: 44  IFSLAISDLLIGLEGIPVYTAFYLNNNEWIWGDVLCDLWLSIDYIVCLASIYTVLGITVD 103

Query: 694 RTHN 705
           R ++
Sbjct: 104 RYYS 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,980,876
Number of Sequences: 27780
Number of extensions: 365352
Number of successful extensions: 1063
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)