Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h11
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.32 
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.97 
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   9.1  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   9.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   9.1  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 228 PVPPLISPGTTSSLRCTVNEFLPRLPKPNLRFRPVADNCEVELLFLPMPG 79
           P  P+ SP +  SL   V    P++P P L   PVA+       F P  G
Sbjct: 177 PAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
 Frame = +1

Query: 361 RETITRGDYAWRCPTF-----NVLPKRILRGGSHTCSRLTS----QARKPNPSSAIRQGL 513
           R  +    +A +CP+F     N +P  I +   H   R  S    +AR+P+PS  I  G 
Sbjct: 195 RRPVNFASHAKQCPSFLAMDPNNIPPEINKVSPHDDLRPLSDSRRRARRPHPSDTIPPGA 254

Query: 514 SRERK--AMYSQSKDNNRTTYARPSLPANANVS 606
           S  R   +   +S  +     A  ++ A AN++
Sbjct: 255 SMARSDPSQVPESNPSAAAAVAAAAVAAAANLT 287


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 745 VPSNNDIREVYVVQHYLGHAHKYFFPLDATVVTPNSN 635
           +   + +  V ++ H LG +HK F  +   V  PN++
Sbjct: 17  IEGKDKVHNVVILMHGLGDSHKSFANMAKNVPLPNTS 53


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 535 TSLSAHEIDLDVWRWK 488
           TS S +EI +D WRW+
Sbjct: 324 TSRSIYEICVDTWRWQ 339


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 231 TPVPPLISPGTTSSLRCTVNEFLPRLPKPNLRFRPVADNCEVELLFLP 88
           T +PP        SL  T  E   + P  N++FR   D+ E+  L +P
Sbjct: 3   TLLPPKSKRQKKESLNPTTIEIPEKFPLVNVQFRASDDSNELASLLVP 50


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 261 FSLDAEEARDTPVPPLISPGTTSSLRCTVNEFLPRLPKPNLRFRPVADNCEVE---LLFL 91
           F L          P L +P  + S    V+  LP + KPNL   P   N + +   L F 
Sbjct: 505 FELPPHNYSQAQSPNLATPSPSFSSLPDVS--LPPIVKPNLMSEPTPTNSDEKSHALGFP 562

Query: 90  PMPGPK 73
           P PG K
Sbjct: 563 PPPGQK 568


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 739 SNNDIREVYVVQHYLGHAHKYFFPLDATVV 650
           S ++I + Y+      H+H Y  PLD  ++
Sbjct: 437 SGSEIADAYLFYQPFAHSHIYLSPLDIRIL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,308
Number of Sequences: 5004
Number of extensions: 69958
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)