Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22h11
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516... 31 1.0
01_06_0329 + 28515740-28516526,28516597-28516631 30 2.4
01_06_0326 - 28495621-28495655,28495726-28496512 30 2.4
12_02_0985 + 25052753-25053691 29 3.1
03_05_0031 + 20040889-20041592,20041932-20041977 29 3.1
01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038 29 3.1
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 29 4.1
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 29 4.1
08_02_0179 - 13904027-13904125,13904177-13904259,13906019-139060... 29 5.4
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 28 7.2
05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102... 28 7.2
>03_02_0034 -
5166987-5167010,5167596-5167659,5168071-5168174,
5168685-5168829,5168914-5169055,5169432-5169751,
5169895-5170196,5170603-5170647,5171218-5171268,
5171374-5171460,5171587-5171764,5172453-5172528,
5173018-5173234,5173604-5173909
Length = 686
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 243 EARDTPVPPLISPGTTSSLRCT-VNEFLPRLPKPNLRFRPVADNCEVELLFL 91
EAR PL+S S L+ + EFLPR+ K ++R V N E L+ L
Sbjct: 98 EARHQEARPLLSSAHKSLLKAKDLLEFLPRMIKEDVRMLDVESNLEKNLVEL 149
>01_06_0329 + 28515740-28516526,28516597-28516631
Length = 273
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 265 VVLTGCGGGPRHAGASSHF 209
V LTGCG GP H G+S F
Sbjct: 145 VKLTGCGAGPEHIGSSYVF 163
>01_06_0326 - 28495621-28495655,28495726-28496512
Length = 273
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 265 VVLTGCGGGPRHAGASSHF 209
V LTGCG GP H G+S F
Sbjct: 145 VKLTGCGAGPEHIGSSYVF 163
>12_02_0985 + 25052753-25053691
Length = 312
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 340 PGSRTAGRETITRGDYAWRCPTFNVLPKRILRGGSHTCSRLTSQARK 480
PG G T T Y++ FN + +CSR S+AR+
Sbjct: 72 PGGGGGGNATTTTSSYSYTASNFNASRSTFVVALPPSCSRTVSEARR 118
>03_05_0031 + 20040889-20041592,20041932-20041977
Length = 249
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 219 EAPACRGPPPHPVRTTKTGGPRACEV 296
EAPA PPP PV+ + G C V
Sbjct: 23 EAPAAASPPPDPVQCSSGSGTADCTV 48
>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
Length = 370
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +3
Query: 222 APACRGPPPHPVRTTKTGGPRACEVLVLQKAEGYRTSLTAWVPD 353
APA R PPP P+RT + A + LVL AE SL VPD
Sbjct: 15 APA-RAPPPTPIRTARGARSAAADELVL--AEFLEASLR--VPD 53
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 439 GSHTCSRLTSQARKPNPSSAIRQGLSRERKAMYSQSKD 552
G + CS S +++PN +S +R LS+ +++ Q D
Sbjct: 227 GEYKCSAFLSVSQRPNMNSLLRDMLSKFQRSSRDQDSD 264
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 723 ERFMSSSIIWATPINTFFPSMRP*SPQTVTCSTHPLK 613
+R SSIIW +P++ FP RP + Q H LK
Sbjct: 446 QRTSDSSIIWRSPVD--FPDARPETLQKTKSVLHKLK 480
>08_02_0179 -
13904027-13904125,13904177-13904259,13906019-13906066,
13906215-13906308,13907114-13907184,13910157-13910343,
13910714-13910717,13910847-13910919,13911044-13911088,
13912046-13912442
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +3
Query: 147 VLVNVAKIRLRCNAVRKWYPAK*EEAPACRGPPPHPVRTTKTGGPRACEVLVLQKAEGYR 326
+L+ + + L A +PA E P+C P P R GG R +L YR
Sbjct: 9 LLLLLLLLPLHAAATPSAHPAYPNEPPSCAAAVPVPERREAHGGGR-----ILDITHYYR 63
Query: 327 TSLTAWVPDSWSG 365
+ +W D G
Sbjct: 64 EDMPSWESDGGVG 76
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 495 AGRVRLPCLACKPRARMTSTSKNP 424
+GRVR PCL +PR+ S+S P
Sbjct: 288 SGRVRRPCLNMRPRSPRRSSSPAP 311
>05_04_0213 +
19109369-19109581,19109803-19109873,19110175-19110229,
19110441-19110626
Length = 174
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 460 LTSQARKPNPSSAIRQGLSRERKAMYSQ-SKDNNRTTYARPSLPANAN 600
L S + NPS+ +R L E + ++ N+R+ Y P LP+N N
Sbjct: 25 LFSSSPHLNPSTLLRGLLETEAQLFVPVGTRSNHRSPYENPPLPSNHN 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,649,551
Number of Sequences: 37544
Number of extensions: 541653
Number of successful extensions: 1688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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