Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h11
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.59 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.78 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.78 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.78 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.3  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 162 PRLPKPNLRFRPVADNCEVELLFLPMPGP 76
           PR P P LR  P A+      +++P P P
Sbjct: 109 PRPPHPRLRREPEAEPGNNRPVYIPQPRP 137



 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 162 PRLPKPNLRFRPVADNCEVELLFLPMPGP 76
           PR P P LR  P A+      +++P P P
Sbjct: 135 PRPPHPRLRREPEAEPGNNRPVYIPQPRP 163


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 11 GTGELEPSTDDVLLKAEPRDYFGPGM 88
          G+G++    DDV L   P++  GPG+
Sbjct: 5  GSGKVHFGVDDVSLYGTPKEEPGPGL 30


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 11 GTGELEPSTDDVLLKAEPRDYFGPGM 88
          G+G++    DDV L   P++  GPG+
Sbjct: 5  GSGKVHFGVDDVSLYGTPKEEPGPGL 30


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 11 GTGELEPSTDDVLLKAEPRDYFGPGM 88
          G+G++    DDV L   P++  GPG+
Sbjct: 5  GSGKVHFGVDDVSLYGTPKEEPGPGL 30


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 216 EEAPACRGPPPHPVRTTKT---GGPRACEVLVLQKAEGYRTSLTAWV 347
           E A    GPP  P+        G P A    VL+KAE ++  +  WV
Sbjct: 39  ELAEKIPGPPALPLIGNALDLFGSPDAMFSQVLKKAENFKDVVKIWV 85


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 243 PPHPVRTTKT 272
           PPHP+R  KT
Sbjct: 452 PPHPIRVAKT 461


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 243 PPHPVRTTKT 272
           PPHP+R  KT
Sbjct: 438 PPHPIRVAKT 447


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 243 PPHPVRTTKT 272
           PPHP+R  KT
Sbjct: 472 PPHPIRVAKT 481


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 243 PPHPVRTTKT 272
           PPHP+R  KT
Sbjct: 421 PPHPIRVAKT 430


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 204 PAK*EEAPACRGPPPHPVRTTKTGGP 281
           P +  +AP  RG PP+P +    GGP
Sbjct: 27  PHQSPQAPQ-RGSPPNPSQGPPPGGP 51


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 492 GRVRLPCLACKPRARMTSTSK 430
           G  ++ C+AC P  R T  S+
Sbjct: 383 GHWQMSCVACSPPPRQTPPSR 403


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 381 RLRLEMSNFQCATKKDS 431
           RLR  M N  CAT K S
Sbjct: 678 RLRNTMENLTCATVKGS 694


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 715 YVVQHYLGHAHKYFFP 668
           YV  HY  +  K+FFP
Sbjct: 128 YVQCHYKQNPEKFFFP 143


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 529 AMYSQSKDNNRTTYARPSLPANANVSRKLQRMCTAGYC 642
           A  S S  +N  + ++    + +++SR   R  ++GYC
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYC 47


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 529 AMYSQSKDNNRTTYARPSLPANANVSRKLQRMCTAGYC 642
           A  S S  +N  + ++    + +++SR   R  ++GYC
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,390
Number of Sequences: 438
Number of extensions: 5433
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)