Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h08
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0191 + 1531107-1531948,1532101-1532233,1532366-1532450,153...    29   3.8  
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    27   8.9  

>03_01_0191 +
           1531107-1531948,1532101-1532233,1532366-1532450,
           1533282-1533502
          Length = 426

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 254 HPSLTSSSTYRVTLLW*TAPVQATNGSRSAGWRPTPP 364
           H  + SSS   V   +   P  A N  R+AG  PTPP
Sbjct: 14  HVQVMSSSLPMVASTFVAEPAAAANKPRAAGLPPTPP 50


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 611 CSRVRVIEAAVRLSELMLKRVATSHRYEVATGVIHS 504
           C+R R   AA +L     KR A SHR  V  G+IH+
Sbjct: 88  CARGRDRRAAAQLHAHAAKRGAASHR-RVCNGLIHA 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.124    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,160
Number of Sequences: 37544
Number of extensions: 256282
Number of successful extensions: 803
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)