Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h08
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical pr...    31   0.65 
U40952-13|AAA81746.1|  237|Caenorhabditis elegans Lamp (lysosome...    31   0.65 
AF186848-1|AAD56712.1|  237|Caenorhabditis elegans LMP-1 protein...    31   0.65 
AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical
           protein F46F11.7 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 22/63 (34%), Positives = 26/63 (41%)
 Frame = +3

Query: 273 LQRTE*RFCGERLLCRRPMARDQLVGAQHHHCQ*HDNLLPQEQNDEQLLPQESQCVLQPR 452
           L R +   C E  +CR       L      H     N+L Q QN  QL PQE  C  QP 
Sbjct: 109 LNRCQGVSCDEGSMCRDGKCEKVLETFCIGHADCGPNMLCQ-QNKCQLKPQEPLCNCQPH 167

Query: 453 AVC 461
            +C
Sbjct: 168 EIC 170


>U40952-13|AAA81746.1|  237|Caenorhabditis elegans Lamp
           (lysosome-associated membraneprotein) homolog protein 1
           protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 169 TDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSCAG 321
           T++ T +TCI+L    QFN+ + + +    F  V FN       V G C G
Sbjct: 25  TNNNTGLTCIILDGDFQFNLVFNEKNTTEKFT-VTFN---ETVSVEGDCNG 71


>AF186848-1|AAD56712.1|  237|Caenorhabditis elegans LMP-1 protein
           protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 169 TDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSCAG 321
           T++ T +TCI+L    QFN+ + + +    F  V FN       V G C G
Sbjct: 25  TNNNTGLTCIILDGDFQFNLVFNEKNTTEKFT-VTFN---ETVSVEGDCNG 71


>AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical
           protein F54A3.3 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 160 WTYTDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPSNASVVNGSCA 318
           +TY  +ET   C V+      +V      N+    HVV N+  N  +V G  A
Sbjct: 363 YTYVTAETTTACTVVLRGPSKDVINEVERNLQDSLHVVRNIMINPKLVPGGGA 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.124    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,786,604
Number of Sequences: 27780
Number of extensions: 199575
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)