Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22h06
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 0.37
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 1.1
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 1.5
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 25 2.6
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 2.6
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 4.6
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 4.6
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 24 8.0
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 24 8.0
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 24 8.0
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 28.3 bits (60), Expect = 0.37
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 225 IRSPLKHLKYNNCIWVCRFYMLH*NVLSKFD 317
+R+ +K LKY + VCR + L N+L +D
Sbjct: 679 VRTYIKALKYGDAFKVCRTHRLDLNILFDYD 709
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 336 FMSFLSHRIY*VHFNATYKTYKPK 265
F SFL+ ++ HF+ T++ Y+PK
Sbjct: 39 FGSFLADDLFGKHFDETFEIYQPK 62
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 38 MLIWCIGLRKFIVKDGLKDSEYGMKK 115
M+I C+G IV D ++ S + MKK
Sbjct: 120 MIIECVGWNGMIVSDKMRKSVFHMKK 145
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 178 RKYDSKEQRIKTNVSYLQPSLFLHSILAVFES 83
R Y K+ +I+ ++YL P LF+H ++ ES
Sbjct: 103 RVYKKKKGKIE-ELNYLPPVLFIHGLMMNSES 133
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 41 LIWCIGLRKFIVKDGLKDSEYGMKKQRWLKIAHIS 145
LI +G+R+ D D+++ K Q+ LK H+S
Sbjct: 259 LIRLLGIRRVFENDPEIDAQFTTKSQQLLKSYHLS 293
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 183 NKENTTPKNSV*KLM*AIFSHLCFFI 106
NK+N TP N++ + A SH F+I
Sbjct: 76 NKKNVTPNNNIRQKNTATSSHPSFYI 101
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 89 KDSE-YGMKKQRWLKIAHISFYTLFFG 166
KD E YG +W K H + + FFG
Sbjct: 175 KDEEPYGKLNPKWTKWFHRNLFPCFFG 201
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 8.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 180 KENTTPKNSV*KLM*AIFSHLCFFIPYSLSLSPSFTMNFLKPMHQISI 37
+++ +P N L I + +CFF+P S+ T F H S+
Sbjct: 264 QDDVSPLNDFAILSPLIHAQICFFLPKSVWQVNGLTSLFRASFHGYSM 311
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 23.8 bits (49), Expect = 8.0
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -2
Query: 222 KLHKYIKILQARYNKENTTPKNS 154
+++ I L+++Y+K +T PK S
Sbjct: 253 RMYNLISNLESKYSKSSTKPKKS 275
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = -3
Query: 302 YILMQHIKPTNPNAIVIF*VFERRSYSNYIST*KFYRRDITKKIRLQRT 156
Y++ H++ + NA++ V + S+ ++ + + R+I+ L RT
Sbjct: 20 YLISYHVRASTQNALLKQTVLQSSSFKSFPTLPRLAARNISNSGILSRT 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,174
Number of Sequences: 5004
Number of extensions: 29483
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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