Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h06
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69...    28   1.9  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    28   1.9  
02_04_0291 + 21637700-21638164                                         27   3.3  
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929...    27   5.7  
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    26   7.6  
06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838     26   7.6  

>09_01_0039 -
           687711-688607,692336-693113,693414-693501,693761-694148,
           694176-694401,694527-694680,695073-695145
          Length = 867

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 73  RERRTQRQRVWNEETEMAEDSSH*FLYAVLW 165
           R   T R+R WN+  E+     H     +LW
Sbjct: 767 RSSSTARERAWNDRLELVPKEEHAAFLMILW 797


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +2

Query: 29  PRYMLIWCIGLRKFIVKDGLKDSEYG---MKKQRWLKIAHISFYTLFFGVVFSLLYLACR 199
           P Y L    GL  +++K G+    YG    K +   K +H++F     G   S   +   
Sbjct: 497 PEYDLHVICGLNPYVIKSGVSPLHYGDSSCKIRYKSKYSHVNFLASPRGSHSSDTVIPTL 556

Query: 200 IFMYLCNLNTIAAQTL 247
            F   CN N I  + L
Sbjct: 557 FFAECCNDNDITDEPL 572


>02_04_0291 + 21637700-21638164
          Length = 154

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 16  EDRLAALYADLVHRLEKVHRERRTQ-RQRVWNEETEMAEDSS 138
           +D   AL    + R  + HR RR Q RQR W +      DS+
Sbjct: 53  DDAARALTLLALRRRRRAHRRRRRQARQRRWRQARATTADST 94


>02_03_0226 -
           16591383-16592030,16592132-16592211,16592246-16592971,
           16593060-16593192,16596839-16597518,16597604-16597666,
           16597740-16597916,16598414-16598542,16598638-16598796,
           16599057-16599224,16599418-16599519,16599812-16599857
          Length = 1036

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 19  DRLAALYADLVHRLEKVHRERRTQRQRVWNEETEMAE-DSSH 141
           DR AAL         K  RERR +++    EET+ +E ++SH
Sbjct: 70  DRYAALTPQQKDDRNKKARERRKRKKEETQEETQASEREASH 111


>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 237 LKHLKYNNCIWVCRFYMLH*NVLS 308
           LKHL+  NC+  C+F++   N+L+
Sbjct: 189 LKHLRIVNCMMDCKFWIRTPNLLT 212


>06_02_0299 - 13969269-13969366,13969614-13969729,13970753-13970838
          Length = 99

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 145 FLYAVLWSRIFFVISRL 195
           FL A  W+R+F++ISRL
Sbjct: 2   FLRAKGWARVFYIISRL 18


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,363,697
Number of Sequences: 37544
Number of extensions: 149162
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)