Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h04
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    28   1.3  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   3.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.1  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   ITSHLDTA*KTCNSFIKKYEDNNCIMV*KCSSNLQYNY 115
           ITSHLDT  K  + FI+K + ++C ++    + LQ+N+
Sbjct: 267 ITSHLDTLTKGISQFIEKRDAHSCKLL---YALLQFNH 301


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 408 VTNKNKHEDEVDEVRE 455
           VTN N  +DEVDE+RE
Sbjct: 170 VTNFNDQQDEVDELRE 185


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 664  RNIEKQMKVEQMISD*QMKI 723
            RNIEK+  VEQ++S  Q K+
Sbjct: 968  RNIEKERTVEQLVSRLQTKL 987


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,404
Number of Sequences: 5004
Number of extensions: 47374
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)