Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22h04
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598...    29   4.1  
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269...    28   9.5  
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376...    28   9.5  
05_06_0161 + 26078019-26078510                                         28   9.5  

>10_08_0972 +
           21958658-21958825,21959006-21959197,21959645-21959845,
           21959920-21960009,21960424-21960591,21961100-21961354,
           21961506-21961789,21961878-21962040,21962156-21962502,
           21962726-21962759
          Length = 633

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 480 NGVREGDFRGNNSNGGNEVREGEIGRNGELVEFEKVILEEIILMECNEVQKP*SSR 647
           +G+ EGD    N  GG  V       NG LVE  +   E  +L+ C+ ++ P  SR
Sbjct: 201 DGIEEGDDGIWNIVGGKIVASLVYADNGALVEKSRDDSEPPLLISCDGIEYPAVSR 256


>12_02_0340 -
           17725866-17725884,17726046-17726326,17726842-17726928,
           17727018-17727113,17728484-17728585,17728720-17728762,
           17728834-17728952,17729348-17729444,17730153-17730214,
           17730370-17730432,17730847-17730949,17731402-17731497,
           17731594-17731742,17732356-17732529,17733078-17733156,
           17733807-17733913,17733994-17734062,17734879-17735043,
           17735206-17735703
          Length = 802

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 429 EDEVDEVREGARGRYGVNGVREGDFRGNNSNGGNEVREGEIGRNGELVEFEK 584
           EDEV+E  +   G    +   E    G      +EV EGE G++GE  E E+
Sbjct: 107 EDEVEESEDDDEGVEVSDEEVEELEEGKGEEKSDEVEEGEEGQDGEEEEKEE 158


>05_06_0271 +
           26836396-26836610,26836793-26836872,26837573-26837641,
           26837694-26837985,26838303-26838399,26838478-26838744,
           26838832-26838909,26839019-26839120,26839251-26839300,
           26839383-26839482,26839645-26839743,26839840-26839968,
           26840319-26840427,26840652-26841055,26841140-26841280,
           26841373-26841393
          Length = 750

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 426 HEDEVDEVREGARGRYGVNGVREGDFRGNNSNGGNEVR 539
           H DE  E+R  A    G    + G F+    N GN+ R
Sbjct: 128 HNDEKKEIRSDADNSEGEKKTKIGSFKKKAINAGNKFR 165


>05_06_0161 + 26078019-26078510
          Length = 163

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 123 QLCF*IAPHHLQNPIPSKCNHPTGYGPRPE 212
           +LC   A H     +PS  +HP  +GPRPE
Sbjct: 49  RLCL-CAHHRAAAGLPSLHSHPRRHGPRPE 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,209
Number of Sequences: 37544
Number of extensions: 266606
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)