Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22g24
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    39   6e-04
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    35   0.010
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    30   0.37 
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    29   0.65 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    28   1.5  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   8.0  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   8.0  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 355 LNTLVKKCPKSLIIFDEIHHMCPSVLDTIIPMLDHHSAV----DEVDYRNTIFIFISNIG 522
           L   +++ P S+I+FDEI    P VL  ++ +LD           VD +N + I  SN+G
Sbjct: 678 LTEQLRRRPYSVILFDEIEKAAPEVLTVLLQVLDDGRITSGQGQVVDAKNAVIIMTSNLG 737

Query: 523 GHEIAT 540
              + T
Sbjct: 738 AEYLTT 743


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +1

Query: 355 LNTLVKKCPKSLIIFDEIHHMCPSVLDTIIPMLDHHSAVD----EVDYRNTIFIFISNIG 522
           L   V++ P ++++FDE+      + + ++ +LD     D    +VD+R+T+ +  SN+G
Sbjct: 596 LTEAVRRKPYAVLLFDELEKAHHDITNLLLQVLDEGFLTDSQGRKVDFRSTLIVMTSNLG 655


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 319  ELEKKKQMLVNTLNTLVKKCPKSLII--FDEIHHMCPSVLDTI 441
            EL KKK  ++  L+ L+KK PK L +   D   H    V+D I
Sbjct: 1167 ELLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDI 1209


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 553 LYEKGVTRSEVEFRDFEPIIRRTAYFQGGFEKAAAI 660
           L EKG+T S+  F    P+IR      GGF  AA +
Sbjct: 424 LLEKGITYSQHNFHLKLPLIRLYLLLDGGFPAAAKV 459


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 388 LIIFDEIHHMC-PSVLDTIIPMLDHHSAVDEVDYRNTI 498
           L+IFDE+HHM  PS L     +L+H  A  E    N I
Sbjct: 144 LLIFDEVHHMASPSYL----RILEHFGAESEKSKVNVI 177


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +1

Query: 160 SNGNKKALVISLHGWSGVGKNFASTMIAE---AIYRKGMQSNYVKLFMGKKDFDCYELEK 330
           S+G K    I L+G  G GK++ +  +A    + +     S+ V  +MG           
Sbjct: 156 SHGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMG----------- 204

Query: 331 KKQMLVNTLNTLVKKCPKSLIIFDEIHHMCPS 426
           + + LV  L  + ++   S+I  DEI  +C S
Sbjct: 205 ESERLVRQLFEMAREQKPSIIFIDEIDSLCGS 236


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 142 KENINESNGNKKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVK 285
           ++N +ES+ N + +   LH  S +  +    M + AIY   M +N  K
Sbjct: 105 QQNAHESSYNSRFIPPVLHSTSSLPASQGGGMPSPAIYSSSMATNLNK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,887
Number of Sequences: 5004
Number of extensions: 64048
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)