Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22g22
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-4|CAB03335.2|  389|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z81119-4|CAB03335.2|  389|Caenorhabditis elegans Hypothetical
           protein T10H4.5 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = -3

Query: 350 ILYTVACFLSSAYF*KAFQEKLCVYKRRDKSKFVLLINNRNIKLQ 216
           I +   CF  S+ + +  ++ LC+ K++D+ + +L+I+  ++  Q
Sbjct: 335 ISHAFVCFAMSSQYRETVKKMLCITKKQDRGQNILVISTASVSSQ 379


>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 429 LLLFSTLNNELCEVKIEPEDVEVKEVVAENTP 524
           ++LF T+  E C   I PEDV +   + +N P
Sbjct: 35  IMLFLTMTAESCIRMIPPEDVGIPGTLPDNDP 66


>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 249 SVDKQ*KHKASADLEESSSFNRCIVFLLLIF 157
           SVD Q +H+A ++L E S    C+   +L+F
Sbjct: 17  SVDPQARHRAESNLAELSESPECLQRCMLLF 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,606
Number of Sequences: 27780
Number of extensions: 176984
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)