Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22g22
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 462 CEVKIEPEDVEVKEVVAENTPEVNDFYNETAEFPELQ 572
           C++++E       E++ +  P+V    +E  E P+LQ
Sbjct: 177 CKLQMESLSHTTDEMIFQWDPDVPLVVDENIELPQLQ 213


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 161 ISNKKTMHLLKELDSSK 211
           +SNK  M+L   +DSSK
Sbjct: 500 LSNKLAMYLYGSIDSSK 516


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 465 EVKIEPEDVEVKEVVAENTPEVND 536
           E+K E ED+E  ++  E +  +ND
Sbjct: 291 EIKKEVEDMEYDDIKTELSTGMND 314


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 33 SINNVLENLTKNYQYN 80
          +I  VLENL  NY+ N
Sbjct: 36 NITMVLENLLMNYENN 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 334  ATVYRMSSFTEEDRSVLEESGTVLLHSPRKAPS 432
            AT Y +    E +    + S TV + +  +APS
Sbjct: 945  ATTYHLRIVAENEIGASDPSDTVTIITAEEAPS 977


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,198
Number of Sequences: 438
Number of extensions: 1999
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)