Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22g13
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    31   0.19 
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    28   1.0  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   1.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   9.5  

>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/88 (22%), Positives = 39/88 (44%)
 Frame = +2

Query: 383 IIILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSV 562
           + +LD G+++         S  E         +  K L+  K   VG++     +TKN +
Sbjct: 8   VFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKCDDTKNDL 67

Query: 563 AEQAPGEFKHIELLSALQTPTWQMIREL 646
           AEQ    + +I +L  +QT  +  ++ +
Sbjct: 68  AEQE--AYWNISVLYPIQTALFSKLQSV 93


>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 347 SDIT*IHNSETFKLVKFTDQERANNFFFNEILNDVGQADCIF 222
           SDI  IH S  +K  K    E  +  + N+++ ++G A C++
Sbjct: 8   SDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVY 49


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -2

Query: 331 YTTVKLSSL*NSLIKNEQIIFFLMKF*MMLDKQIVFFLGFRYRLS-LTELKHE---QRST 164
           Y T ++ S  N+L+K   +I  +++  + LD  +   L   Y+LS L E + E   Q S 
Sbjct: 86  YATKQMISQLNNLVKETDVIEDMLREDLELDSDMPNLLRAHYKLSKLREFREEALYQASL 145

Query: 163 NGQVNM 146
            GQ ++
Sbjct: 146 EGQSDL 151


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 428 FHRHLQRFFHYPKLLSSPDLF*EAFCSSDIT*IHNSETFKLVKFTDQERANNFFFNEIL 252
           FH HL      P   +    F EA     +  + +   ++++   +QERA  +  NE+L
Sbjct: 35  FHNHLDEPLVDPYDANGNPQFSEANALKHVIHLSDDIGYRILGTIEQERAREYIMNEVL 93


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 386 IILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSY 517
           ++LD G N+ N + K  K+ + ++ +    I  T I+++  + Y
Sbjct: 653 VVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLY 696


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -2

Query: 592 MFELSRSLFS-YAV-LRVLRSEQNYTHITVLSLTENFGFNNASGTFTRHLIKAFFVFFIG 419
           +    RSLF  Y + L VL   Q++  I    +++   F      F      AF+  FI 
Sbjct: 185 LISYDRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFRGKSNSAFYNDFIQ 244

Query: 418 ICNVSSIIQNYYQALI 371
                 +IQ Y  +L+
Sbjct: 245 SFKSEDLIQEYESSLL 260


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 87  LYDVMQHHTLREGNKHHTITQHV 19
           LY+V  HH L+ GN    +  ++
Sbjct: 87  LYNVYAHHALKNGNAKSLVANYI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,172
Number of Sequences: 5004
Number of extensions: 51460
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)