Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f24
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    28   1.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.7  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.1  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.1  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 214  SIVLSFNAVDLCSSVVITRNDTATMDII--IFTIPNKSIPRRKG-MQKQHFFTSGTLTCI 44
            +I L FNA  L  S+  +++   + DI+  +FTI +  I      + K+    SGT +C+
Sbjct: 871  TITLIFNA--LVDSLPTSKHIKNSNDILSSVFTINDMLIDEMTAYLSKKESLCSGTFSCL 928

Query: 43   LVSC 32
            L  C
Sbjct: 929  LACC 932


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 477 EKAQIKIDDEVPP-PCPE 527
           E  +IK+DDE+PP P PE
Sbjct: 339 ESMEIKVDDEIPPFPFPE 356


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 257 AHSKDTEENSRGSHLHSIVVQCR 189
           AHSKDT E  R SH HS  ++ R
Sbjct: 465 AHSKDTNEKIRLSH-HSFKIKNR 486


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 219  TTSTVLFSIFGMSMILNILLLVAGYQKDISMLRL 320
            T S +LFS+F +S ++  L  +  +QK    +RL
Sbjct: 1056 TVSIILFSLFLVSPLICALATMLAFQKFFYQVRL 1089


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 446 DDVNLHCYSYEGGQNFENHLPREQHESWDQCREYSDHAVI--IIQTQH*DV 300
           DD+       E  +N EN+  R+Q ES  +   Y D+ VI   ++TQ  +V
Sbjct: 392 DDIFKRLKQQEDRRN-ENYRRRQQRESNQESESYVDNVVIQRSVETQSTEV 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,454
Number of Sequences: 5004
Number of extensions: 48535
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)