Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f24
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    29   3.1  
03_02_0183 - 6225827-6226414,6226478-6226512,6227244-6227331,622...    29   4.1  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    28   7.1  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +2

Query: 119 DCKYYYIHRSCVVSSYHDRATQVNGIERQYYGGDYLYCSLQYLWNEHDIKYLATRGWISE 298
           D KY + H S   SSYHD     N      + G  L CSL    N   ++ LA  G +++
Sbjct: 377 DGKYSHCHDSECCSSYHDTCKLANS-----FSGQDLLCSLS---NARSLELLAHSGEVNK 428

Query: 299 R 301
           +
Sbjct: 429 Q 429


>03_02_0183 -
           6225827-6226414,6226478-6226512,6227244-6227331,
           6228892-6228900
          Length = 239

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 338 GHYIRGIDPNFHAALSEDGFQSFGRLHSYSNANLRHHISEE 460
           G Y+ GI   F  A  +  ++ FG+ H+Y  ++  + +S++
Sbjct: 8   GAYVNGIASTFQIAYRKISYRKFGQGHTYEVSSDTYKVSDD 48


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 329  LRRGHYIRGIDPNFHAALSEDGFQSFGRLHSYSNANLRHHI 451
            LR G Y+R I     A LS+      GRL  YS+++L  H+
Sbjct: 2903 LREGKYVRSIRHPSGAGLSKLVASQHGRLVFYSDSDLSLHM 2943


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,964,770
Number of Sequences: 37544
Number of extensions: 294386
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)