Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f21
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0393 + 17255315-17256019,17256107-17257909                       29   2.6  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   3.5  
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256...    28   6.1  
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273...    28   8.1  
04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889...    28   8.1  

>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +1

Query: 361 ATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTS 540
           AT  +D+     ELD+++K     +SQ   T+  +  ++ ++ +  K  V+ L     T 
Sbjct: 334 ATALEDLQSVKMELDQLQKEYTSLISQRDNTETKARKAIVASQEIEK-VVQDLTIKVIT- 391

Query: 541 MRDFDLYKQRFNEILAKNKE--ESLVDMEDFINDMFQNMMSSVDIKV 675
           M+D  +   + N ++A+ K+   +L   +D +N  +QN +  +D +V
Sbjct: 392 MKDL-ITTSQANHVIAEGKKINAALAYQQDMVN--WQNELKQIDDEV 435


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
 Frame = +2

Query: 224 VKERPSSLIQM*TFRKVPHSPTSIHLQSITNDMSTMKCPLGNPI*VLPPIRMSY*QIQNS 403
           V E P S      +   P +  S  L S  + + T   P+G+     PP +    Q+   
Sbjct: 692 VSESPPSNSIGYFYGSTPENHRSSRLSSSPHGIPTGSSPVGSVPKSFPPFQHPSHQLLEK 751

Query: 404 TKSKREFMRLFHKNCKPTRAHLSVS-TRT*NSLRRL*KSYLR 526
            K +++    F   C   R  L +  +   NSL R    YLR
Sbjct: 752 NKFQQQRYNKFKNRCIAERKKLGIGCSEEMNSLYRFWSYYLR 793


>02_01_0356 +
           2563773-2563898,2564031-2564131,2564375-2564498,
           2564592-2564651,2564762-2564829,2565520-2565562,
           2566026-2566091,2566237-2566275,2566375-2566457,
           2566654-2566765,2566840-2566923,2567026-2567184,
           2567268-2567372,2567451-2567555,2567661-2567801,
           2567920-2568024,2568111-2568335,2568762-2568875,
           2568963-2569178,2569674-2569733,2569827-2569940,
           2570047-2570132,2570211-2570319,2570408-2570586,
           2570673-2570741,2570792-2571005
          Length = 968

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 304 KYYERYEHDEVPVRESDLSATTDKDVILTNSE-LDK-IEKRVYETVSQELQTDESSSISL 477
           K+ ++ E  +  + E DL+     ++ +  ++  D  ++K   E++ QE+++  SS  S+
Sbjct: 30  KWKKKDEKKDDDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSV 89

Query: 478 DSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILA 588
              +KF +     L   F T     DL K+   +IL+
Sbjct: 90  PKPLKFLRPHYGTLKSYFETMPESSDL-KRYMADILS 125


>09_05_0005 +
           20026190-20026343,20026483-20026682,20026918-20027309,
           20027646-20027778,20027858-20027942,20028216-20028235
          Length = 327

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 469 ISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILAKNKE 600
           + L+S +   K  +EKL E   T+ R        FNE+LA+N E
Sbjct: 269 LELESKVLVLKIEIEKLSEKLATAQR-------TFNELLAQNNE 305


>04_04_1614 +
           34786296-34786315,34787432-34788347,34788426-34788950,
           34789065-34789442,34790435-34790740
          Length = 714

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/66 (24%), Positives = 38/66 (57%)
 Frame = +1

Query: 394 SELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRF 573
           SE D ++ RV       L+  ES  +  +  +KF K+ ++++ +NF + +++ +L  +++
Sbjct: 490 SEADDLDSRV-----AALRATESEKVQQE--LKFVKSQMDQIIKNFESQLKNSEL--EQY 540

Query: 574 NEILAK 591
           N ++ K
Sbjct: 541 NSLMRK 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,444
Number of Sequences: 37544
Number of extensions: 254471
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)