Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f20
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   3.5  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 157 CEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 261
           C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 64  CGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +1

Query: 565 PYDEVHRYHSEDEQVNN--REHS*SHFPGNLCYHYERKKPLSTH 690
           PY+ +HR H    Q +N  R +           H  R  P+ TH
Sbjct: 424 PYNGIHRLHESPSQFSNQSRYNWEPILENRSLLHLNRPPPIETH 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,437
Number of Sequences: 5004
Number of extensions: 53623
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)