Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f16
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    29   0.58 
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   1.8  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    26   4.1  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   5.4  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.4  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   7.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.4  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 462 KNYF-IFHIYFKKK-RNIGISFQSLLDNDALMWEERAWYCCSWTDSFTSFS 316
           KNY+   H Y   + RNI + F +LL  D++ WE   + C   T+  T+ S
Sbjct: 487 KNYYETIHRYETNRLRNIALFFANLLSTDSIGWE--VYDCVRLTEDDTTAS 535


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = -1

Query: 390 DNDALMWEERAWYCCSW----TDSFTSFSIIP--GAFAFTSESGILDC 265
           D  A +W+ RA YCC+     T    S S  P    F   +E GI  C
Sbjct: 169 DKLAKLWDLRAAYCCATFPGNTSDINSISFFPSNADFVTGAEDGIARC 216


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 201 TKREKFKHMLSYALHSWHMHAD 266
           T REKFK  +++ L + H HA+
Sbjct: 190 TTREKFKQAMTFNLDALHEHAE 211


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 631 YLKCFIFIHRIKILFFTYLIVFRKVVLGTTN 539
           YLK F F+ R+K + F     +R+V LG  N
Sbjct: 608 YLKIFNFLWRLKRIEFALAHSWRRVNLGERN 638


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 220 LNFSLLVHSNKNVLSYKCTQFYNRNHNCTSY 128
           LNFSL  + N  ++ Y   + ++ NH C S+
Sbjct: 48  LNFSLRENKNYLIIVYLPIEGFSANHMCISH 78


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 7   TQGRAVRNMRILGILAAVACFQLGV 81
           +  + +R ++   +LA VAC+QLGV
Sbjct: 82  SSNQPLRQIQFFVLLALVACYQLGV 106


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 218 QTYALVRLAFVAYARRQSRIPDSLVNAKAPGIMEK 322
           +TY+  R+    Y R      D +++ + PG++EK
Sbjct: 464 KTYSSYRITIFNYFREYPGSKDIMLDGRGPGMLEK 498


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 73  LGVWACEPNQAQNGCK 120
           LG W  EPNQ +N  K
Sbjct: 29  LGTWRSEPNQTKNAVK 44


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 142 NCTSYRIFCTHSEP--DWAHTPKRPIESRRQQLR-CRGYA 32
           NC +Y   CT+ +P     H P++ IE    +L+  RG A
Sbjct: 34  NCIAYNYECTYGQPFKRLRHAPEKYIEFLELRLKYLRGLA 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,606
Number of Sequences: 5004
Number of extensions: 55056
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)