Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f11
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z54281-7|CAA91050.2|  202|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 429 VADLKTNNTFHELKNSRNPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLE 602
           V D KT   + +    + PVI++ H  GT V+   V +L        S + + P  L+LE
Sbjct: 166 VEDTKTVYEWLKENCGKTPVIVWGHSMGTGVSCKLVQDL--------SREQQPPCGLILE 217

Query: 603 APFNNLKDEIAKHPLSKLVSWLPYF 677
           +PFNNLKD +  HP+  + SW+  F
Sbjct: 218 SPFNNLKDAVTNHPIFTVFSWMNDF 242



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
 Frame = +3

Query: 276 VNFPR--NLNYDSPSSCSV-TCGRNLNIEFRSIVDNFLIRLGIWHILPNS---EIKDVAD 437
           +NF R  N +Y+  +S +V + GR+L++  +S       R+G+WHILPN    E +    
Sbjct: 44  LNFRRLPNTDYNDLASNNVKSIGRSLHLPGKSG------RIGVWHILPNKLSLEWRTEGK 97

Query: 438 LKTNNTFHE-LKNSRNPVILYCHGTAVAANFVSNLE 542
             T   F + +++S N +I Y HG +    F   +E
Sbjct: 98  HPTERDFDDMMRDSENQIIFYAHGNSFDRTFYHRVE 133


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 214 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 113
           RGSTA   TR P  + AP A R+P    R   +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331


>Z54281-7|CAA91050.2|  202|Caenorhabditis elegans Hypothetical
           protein F46C5.2 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 429 VADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAP 608
           +ADL+ N    EL+  R   +L C  T      V N  + C +  S   RLP A   E  
Sbjct: 92  LADLEMNRRTSELRMRRVGAVLLCEDTFNQTTCVCNRRDKCNDIHS---RLPFATYAEGL 148

Query: 609 FNNL 620
           F  +
Sbjct: 149 FRGV 152


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 427 SLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 317
           S++  F SI Q+  + + LSTIERN +   L    +Q
Sbjct: 195 SIVCNFLSIMQLKLMKKNLSTIERNLLFSTLASSVIQ 231


>AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical
           protein F40C5.1 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
 Frame = +3

Query: 414 SEIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAA------NFVSNLE--EL------C 551
           S+++ V + K  N+F++++NSRN  +   H  A AA      NF   +E  EL       
Sbjct: 152 SDMRCVVE-KIYNSFYDIQNSRNETLKIGHIEAHAAPVTWNCNFHQGIEKWELLAMGSDT 210

Query: 552 QERGSEKLRLPDALVLEAPFNNLKDEIAKHPLS 650
           +ER S   RL D L  +    +L ++I K+ LS
Sbjct: 211 EERVSSAARLADILRKQGVRGSLVEKIHKNILS 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,772
Number of Sequences: 27780
Number of extensions: 291368
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)