Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f09
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    30   0.30 
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   1.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   8.5  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 285 TPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQ 464
           TP K     ++  K+D +  R + ++ + E   A  + E+LL  +   D Q +I +G+T 
Sbjct: 461 TPVKVAGRSEQSNKKDTEFARTKSYREQREFLPAFAVREQLL--SVIRDNQVLIVVGETG 518

Query: 465 VNRFTY--KFKYNSG 503
             + T   +F Y  G
Sbjct: 519 SGKTTQLAQFLYEDG 533


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 32  IEICLPDFICNNSYKNADI*TCFI-VTKHAE 121
           ++IC    IC+N YKNA    C I  T+H E
Sbjct: 168 LKICTDVLICSNDYKNALWILCLIKETQHNE 198


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = -2

Query: 337 STSLLYSSFKSITALVGVSILKIK*LASLWVIPCAVDL*GIGRNPKFSMFL---MIPPQS 167
           S + L +S  S +ALV +  L +      WV  C ++      N +F++ +   + P + 
Sbjct: 522 SDAFLTNSNSSESALVHMQKLNLPDFTPSWVKRCVIETFAKFPNDRFNVIVKPALNPAER 581

Query: 166 ---NIACEILFNEVFNSGFGMFRNN 101
               I C    NE F +G G    N
Sbjct: 582 MTVRICCHDCINEYFTAGPGFTFGN 606


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 237 HGMTHKEANYFIFKIDTPTKAVID 308
           HG+T KE    I+KI T T A +D
Sbjct: 177 HGITEKEELQHIYKILTLTPASLD 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,421
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)