Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f07
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    97   2e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    93   4e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    56   3e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    56   6e-09
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   5.6  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
 Frame = +2

Query: 86  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 253
           M+EI+ IH+GQAG Q  NACWELYCLEHGI+P+G +    A  ++D     FFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 254 FVPRVVMIDLEPTPI 298
           +VPR + +DLEP  I
Sbjct: 61  YVPRSIYVDLEPNVI 75



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 25/41 (60%), Positives = 35/41 (85%)
 Frame = +3

Query: 537 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLD 659
           D++RTG YR LFH   LITGKEDA++N+ARG++ VG+E++D
Sbjct: 76  DQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVD 116


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
 Frame = +2

Query: 86  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 241
           M+E++ +H+GQAGVQ  NACWELYCLEHGI PDG          +N   ++  G FFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 242 GAGKFVPRVVMIDLEPTPI 298
           G GKFVPR + +DLEP  I
Sbjct: 61  GQGKFVPRSIYVDLEPNVI 79



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 24/44 (54%), Positives = 36/44 (81%)
 Frame = +3

Query: 537 DEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVAL 668
           D++RTG Y+ LFH   ++TGKEDA++N+ARG++ VG+EM+D  L
Sbjct: 80  DQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVL 123


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 89  KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 262
           +EI+ +  GQ G Q  +  W+  CLEHGI PDG L +F  +  +    FF ++   +++P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 263 RVVMIDLEP 289
           R ++IDLEP
Sbjct: 63  RAILIDLEP 71


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 86  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 259
           M+EI+HI  GQ G Q   A W     EHG+   G+              +F+E   GK+V
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 260 PRVVMIDLEP 289
           PR V++DLEP
Sbjct: 61  PRAVLVDLEP 70


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 105 YTLDKPVCKPLTPVGNCIVLNT 170
           Y LD  + + +TP   CIVLNT
Sbjct: 96  YNLDTAIKEVVTPGHTCIVLNT 117


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 125  HRLVQCVCVEFLSFSINHCKFW 60
            H+++QC  V FLSF I+ C  W
Sbjct: 958  HQVLQCKDVSFLSF-ISDCLKW 978


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 151 FPTGVSGLHTGLSNVYV*NFFHFQLITVNFGFYHILFNLQSN 26
           FP  +  L++G    Y  NFF   L  +  G+YH L N  SN
Sbjct: 249 FPKKIRLLYSGN---YQGNFFPLFLSILCVGYYHHLLNNPSN 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,351
Number of Sequences: 5004
Number of extensions: 55341
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)