Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f06
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    44   2e-05
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    33   0.032
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    33   0.043
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    27   2.8  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   3.7  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    27   3.7  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  

>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 7/173 (4%)
 Frame = +3

Query: 153 VRENLVTTAVNFLTNPNVQRCTVESKERFLRSKGLTDTEIQKALEKCMN--LVEFPSMSS 326
           +RE+L+  +V FL    V       K  FL+SKGLT  EIQ+A +   N     +P   +
Sbjct: 1   MREDLLRNSVEFLREKTVLDAPDVKKIEFLKSKGLTAEEIQEAFKLAKNPLFPSYPRFEN 60

Query: 327 ELMFFHQSRSSWFRDHVLPFLMYGSLAYGCYWFYKNCVRHLIFV-DQPKRKTTNECLE-- 497
              F  +    WF   ++  +  G  A+  Y   K  +  +     Q   +     L+  
Sbjct: 61  TSNFVSRDWRDWF---IMGVISTG-FAWSAYSLVKKYIAPMFRAPSQNAYEADKNALDAK 116

Query: 498 --EVRKSLEDLNTNVFALKGELNSLQQNTFRCSLDTIKGDIASVKGILLNRNQ 650
             E  K LE+L+     L  E    QQ+    +LD ++  + ++K    NR++
Sbjct: 117 FLEAHKILENLDEQTRKL-SERTEKQQDELDIALDDLEETLNTLKRTSENRDR 168


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 17/47 (36%), Positives = 31/47 (65%)
 Frame = +3

Query: 183 NFLTNPNVQRCTVESKERFLRSKGLTDTEIQKALEKCMNLVEFPSMS 323
           N  +NP   + +++S ER L SK +TDTE  + LE C+++++  S++
Sbjct: 483 NTKSNPLPAK-SIDSLERALSSKKITDTEKNELLETCLSILDSWSLA 528


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 14/64 (21%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +3

Query: 492 LEEVRKSLEDLNTNVFALKGELNSL--QQNTFRCSLDTIKGDIASVKG-ILLNRNQFPSL 662
           + E++  +  +  ++ ++KGE+  +  +    +  +D++KG++A +KG + + +N   S+
Sbjct: 189 MAEMKGEMTVMKNDIASIKGEMAEMKGEMTIMKSDIDSVKGEMAEMKGEMTIMKNDIDSV 248

Query: 663 KSRT 674
           K  T
Sbjct: 249 KGET 252


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 600 IKGDIASVKGILLNRNQFPSLKSRTDPPSIPAWQRQSEEAT 722
           +    +S+KG ++   +F S+++ TD P +P +     ++T
Sbjct: 21  VSSTASSLKGSMMTIPKFTSIRTYTDSPEMPDFSEYQTKST 61


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = -1

Query: 462 DLRILNVGRSSYKTSNIHKLNFHTSKMEEHDL*TKNSWIGGKTSAQMTSRETQLDSCISL 283
           D+R LN       T N+H       +++E ++     W      A   ++E +L +C  L
Sbjct: 330 DIRRLNEKVEHTYTQNVHNACLREQQIKEDEIRRAQGWFFPDKEALKKAKELRLPNCEEL 389


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 393 YGSLAYGCYWF----YKNCVRHLIFVDQPKRKTTNECLEEVRKSLEDLN 527
           Y ++A    WF    + +C+  L F   P +KT    L  +RKS E  N
Sbjct: 13  YSAIARSSSWFNNSLFSSCL--LRFYSNPPKKTKKNTLISLRKSAETAN 59


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/52 (21%), Positives = 28/52 (53%)
 Frame = +3

Query: 429 KNCVRHLIFVDQPKRKTTNECLEEVRKSLEDLNTNVFALKGELNSLQQNTFR 584
           ++C++  ++    KR   +  +E   + +  L +  F+LKG++   ++ T+R
Sbjct: 19  ESCLKKQLYDFYHKRDEFSRDIESELEKVAKLKSESFSLKGKITQKEELTYR 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,980
Number of Sequences: 5004
Number of extensions: 58004
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)