Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22f06
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0233 + 28559786-28559861,28560007-28560230,28560345-285603... 43 3e-04
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 40 0.002
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 40 0.003
07_01_0624 + 4651995-4654715 31 1.3
03_05_0065 + 20450814-20452748 30 2.2
09_04_0090 + 14512641-14513355,14514158-14514219 29 5.1
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 29 5.1
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 5.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 5.1
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259... 28 6.8
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395... 28 9.0
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 28 9.0
>05_07_0233 +
28559786-28559861,28560007-28560230,28560345-28560390,
28560571-28560602,28560713-28560755,28560840-28560907,
28561532-28561576,28561640-28561708,28561901-28562113
Length = 271
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 135 IAAGDGVRENLVTTAVNFLTNPNVQRCTVESKERFLRSKGLTDTEIQKALEKCMN 299
+AA + VRE LV +AV FL +P V + + FL KGLT EI +A + ++
Sbjct: 47 VAAVEPVREELVQSAVGFLKHPKVVASSDVQRRSFLEKKGLTVDEIDEAFRRLLS 101
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 141 AGDGVRENLVTTAVNFLTNPNVQRCTVESKERFLRSKGLTDTEIQKALEK 290
A VRE+ V AV FL++P V+ V + FL KGLT EI +A +
Sbjct: 41 AAVAVREDYVQNAVKFLSHPKVRGSPVLYRRSFLEKKGLTKDEIDEAFRR 90
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 153 VRENLVTTAVNFLTNPNVQRCTVESKERFLRSKGLTDTEIQKALEK 290
+RE+ + AVNFL +P V+ V + FL KGLT EI +A +
Sbjct: 31 MREDYIQNAVNFLGHPKVKGSPVFYRRSFLEKKGLTKEEIDEAFRR 76
>07_01_0624 + 4651995-4654715
Length = 906
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Frame = +3
Query: 216 TVESKERFL------RSKGLTDTEIQKALEKCMNLVEFPSMSSE----LMFFHQSRSSWF 365
T+ KE+F S G+TD + +L+K NLV+ SS+ LMF + SWF
Sbjct: 516 TISKKEKFATTWDCPNSDGVTDGSRRVSLQKDGNLVQAAKCSSQLRSMLMFTEEISLSWF 575
Query: 366 RD 371
D
Sbjct: 576 TD 577
>03_05_0065 + 20450814-20452748
Length = 644
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 720 SPPRTAAATPVSTAGLCDSSVTG 652
S PR AAAT VSTA D++V G
Sbjct: 14 SKPRPAAATSVSTAATADAAVAG 36
>09_04_0090 + 14512641-14513355,14514158-14514219
Length = 258
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 635 IEQESIPVTEESHRPAVDTGVAAAVRGGDVH 727
I++ + + SHR A DT +++A RGGD H
Sbjct: 132 IDRLAADPSSSSHRAAGDTRMSSAERGGDHH 162
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 726 WTSPPRTAA-ATPVSTAGL-CDSSVTGIDSCSI 634
W SPPR AA +P S AG+ DS+ T ID S+
Sbjct: 74 WDSPPRAAARPSPPSGAGVDYDSTATIIDGKSV 106
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 495 EEVRKSLEDLNTNVFALKGELNSLQQNTFRCSLDTIKGDIASVKGILLNRNQFP-SLKSR 671
+++ ++ ++N + G+ NS+ Q+ F+ + + K + +N+NQ L++
Sbjct: 335 DDILAAISNMNMSKDGTLGDSNSISQSKFQSEISDHQNISLDPKALQVNKNQHSLMLEAD 394
Query: 672 TDPPSIPAWQRQSEEATS 725
TD IP + S + S
Sbjct: 395 TDYLGIPPISQPSNPSFS 412
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 92 SYQQHNQKNEYRNFNRCWGRSTRKFGNNSSEFPDKPKRAKVHSRKQRTIPT*QRSN*Y 265
S ++H+ ++ R+ GRS + ++S + PKR++ HSR + + RS Y
Sbjct: 576 SSRRHDYGDDGRSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSY 633
>03_06_0153 -
32024787-32024892,32024997-32025079,32025159-32025978,
32026122-32026327,32026887-32026975,32027132-32027192,
32027297-32027416
Length = 494
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 195 NPNVQRCTVESKERFLRSKGLTDTEIQKALEKCMNLVEFPSMSSEL 332
N + + ES E+ L+S+ L + +K L+ + VEFPS+S L
Sbjct: 322 NKRRENSSTESVEKCLKSEPLVHSSRKKVLKGNDSEVEFPSLSQWL 367
>05_05_0353 -
24338717-24338946,24339046-24339134,24339421-24339500,
24339768-24339902,24340231-24340461,24340540-24340634,
24340734-24340819,24341467-24341570,24341674-24341805,
24341883-24341999,24342170-24342229,24342779-24342820,
24342878-24342952,24343127-24343177,24343256-24343436,
24343548-24343594,24343710-24343775
Length = 606
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -3
Query: 739 PGASVDVASSDCRCHAGIDGGSVRLF---SDGN*FLFNKIP-LTEAISPLIVSRLHLNVF 572
P VD SSDC+ R F S N ++ P LTEAIS +++ +HL +
Sbjct: 376 PSELVDDKSSDCKYKESCVADKHRRFVPNSANNLNQYDVSPSLTEAISSVVLVTVHLMLP 435
Query: 571 CWR 563
C++
Sbjct: 436 CFK 438
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 615 ASVKGILLNRNQFPSLKSRTDPPSIPAWQRQSE 713
A+ ++L FPSLK+ PP P QR +
Sbjct: 143 AAAAAVVLRGEDFPSLKASVAPPPPPPAQRHKD 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,641
Number of Sequences: 37544
Number of extensions: 356894
Number of successful extensions: 1169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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