Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f05
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   2.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   2.6  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.6  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    27   2.6  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    27   3.5  
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    27   3.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.6  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   6.1  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
 Frame = -1

Query: 331 WCHFQGVKTFRGLHFLSKF*SFCVFDLLLQQILY---FFFAFEWHIY----FCPLLEQRY 173
           WC F  +   RGL +L+ F +F   ++L +  +Y    F+ +    +    FC L++  Y
Sbjct: 308 WCLFGVLMIARGLIYLALFRNF--LNILKRMAIYCGACFWVYACIFFLTRVFCFLIDTPY 365

Query: 172 FAAK*ITSELNNVYACSHIY*VPL 101
              + I  E+ +++A  ++Y + L
Sbjct: 366 PQFEKIPLEIYSIFAAINVYIIEL 389


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 227 KIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLKEDLKLFQEFMKS 400
           +I  +++ Q + ++ SKL  K    +  + L +  PSS++E   +KE +       KS
Sbjct: 547 RIYRIIKSQNKMSRSSKLQIKQLYGQVLHALSLPLPSSNDEQTPVKETIPFLHIRKKS 604


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 303 FAVFIFSASFDLFAFSICSCNKSFIFSLLLSGIFTSVHCWNNDILLRNKLPASLTTFT 130
           F   +FSA      FS+C+   S  F  L    F S+ C+ +   L   LP S+ + T
Sbjct: 2   FFFLVFSACEVFVGFSLCTLVISVPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSHT 59


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 371 LKLFQEFMKSGCYKHLTVKQ 430
           LK+++++M  G Y HLTV +
Sbjct: 175 LKIYEKYMARGAYAHLTVSK 194


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +1

Query: 496 EISHRWLSSLKLFQSYKFVQIIMLHR 573
           E++  ++S++K ++SYK+V+ I  HR
Sbjct: 462 EVNDLYMSNIKPWESYKYVREIESHR 487


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 218 SKEKIKDLLQEQIENAKRSKLAEKMKTAKGFYTLEMAPPSSSEEMAKLKEDLKLFQE 388
           SK    D       +AKRS    + K  + F+  +       E++ KLKE LKL +E
Sbjct: 21  SKASDTDPTLANASSAKRSAFESREKAKEDFFVHQ----HEIEQLRKLKESLKLHRE 73


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 367 RFEIISRIHEIWLLQTPDSQTSV 435
           + E++S+I +  LL+ PDSQT V
Sbjct: 400 KVELVSKISDAILLRLPDSQTFV 422


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 249 SCNKSFIFSLLLSGIFTSVHCWNNDILLRNKLPASLTT 136
           S  KSF+        F SV  W ND +++N+L A  TT
Sbjct: 282 STGKSFLLHNNSPNKFVSV-AWGNDSVIKNRLMAIDTT 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,586
Number of Sequences: 5004
Number of extensions: 62881
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)