Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f04
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         31   0.13 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.9  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   6.7  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   8.8  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   8.8  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 14  FRDIKPASRFHILTIPKRHIEDVKSLTSAD-KELLNRMMSISRELLSKNNLSIEDARFGY 190
           F ++KP    H+L IP+R +  +K LT ++  +L   +  + + +    + S  +     
Sbjct: 26  FVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQD 85

Query: 191 HWPPFRSVKHLHLHTIAPESEMGF 262
                ++V H+H+H I P  +  F
Sbjct: 86  GVDAGQTVPHVHVH-IIPRKKADF 108


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 168 LKMHALGITGHRFVQSNICICIL*RLNPRWDSLEE*YSKKTLIGL 302
           L M +  I+  +FV+S  C+ +L  +NP W  + + +SK   +GL
Sbjct: 467 LVMKSWDISEDQFVES--CLGVL-EVNPEWSGIVKTWSKSHTLGL 508


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 268 SNESHLGFRRYSMQMQMF-D*TKRWPVIPKACIF 170
           S  SHL  +  +  +Q+F + +KRW + P+ CI+
Sbjct: 109 SKYSHLQEKNRTSFLQVFKERSKRWFLFPRLCIY 142


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 392 YVCLVEFR*NNLFRLQLHFTLK*RRHIPAKQTNKSFF 282
           +VC  E + + + RLQ  F  K      A+Q NK+ F
Sbjct: 456 FVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALF 492


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 264 MNPISDSGAIVCRCKCLTERNGGQ*YPKRASS 169
           ++ ++D+ A +CR  C   RNG    PK   S
Sbjct: 33  IDEVNDAAAALCRVYCYLSRNGLLKRPKEDDS 64


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 202 RWPVIPKACIFNTQIV 155
           RWP +P+A I+N+  +
Sbjct: 241 RWPTVPQAVIYNSPYI 256


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 319 DIFRRNKPIRVFFEYHSSNESHL 251
           + F   KPI  F E+ SS+  HL
Sbjct: 250 EYFTPRKPIDTFLEHRSSSHDHL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,607
Number of Sequences: 5004
Number of extensions: 49655
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)