Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f04
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286...    70   2e-12
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683...    32   0.42 
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    29   2.3  
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517...    28   5.2  
03_06_0040 + 31240164-31241102,31241280-31241897                       28   5.2  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    28   6.9  
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    28   6.9  

>04_04_0631 -
           26728144-26728228,26728321-26728398,26728584-26728650,
           26728748-26728824,26729961-26730012,26730248-26730294,
           26730457-26730527
          Length = 158

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
 Frame = +2

Query: 44  HILTIPKRHIEDVKSL--TSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVK 217
           H L IP  HI  V +L  T+ D +L++ M+++ R+LL+++  + E+ RFG+H PPF SV 
Sbjct: 58  HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117

Query: 218 HLHLHTIA 241
           HLHLH +A
Sbjct: 118 HLHLHCLA 125


>05_06_0060 -
           25266735-25267210,25267323-25267569,25267650-25268345,
           25268457-25268709,25268786-25269261,25270760-25270909
          Length = 765

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 125 MSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFV 304
           M +SR+ LS NN+S +D  FG     F+ V  +    +     +G+   ++   + YWF 
Sbjct: 527 MPVSRDTLSPNNVSFDDCHFGTQC--FQQVTKVKSRIVLKILRLGY-NVLLSDVDVYWFH 583

Query: 305 SP 310
           +P
Sbjct: 584 NP 585


>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 2   EVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK 106
           +V  FRDI P +  H+L IPK  I D   LT  DK
Sbjct: 65  KVLAFRDINPQAPVHVLVIPK--IRD--GLTGLDK 95


>04_04_0268 -
           24050721-24050971,24051112-24051276,24051479-24051749,
           24052344-24052517
          Length = 286

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +2

Query: 71  IEDVKSLTSADKELLNRMMSISRELLSKNNLS--IEDARFGYHWPPFRSVKHLHLHTIAP 244
           IE +  L +A  E + R  S + +LL   +LS  + D R G  WP       +H+   AP
Sbjct: 170 IEHIPELVAASTENVQR--SAAAQLLKDGSLSFHVADGRLG--WPDDAPYDAIHVGAAAP 225

Query: 245 ESEMGFI------GRVIFKKNSYW 298
           E     +      GR++    SY+
Sbjct: 226 EIPQPLVDQLKTGGRMVIPVGSYF 249


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 92  TSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHL 229
           T  D    NR    S+ L + N  S+  A +G HW   R +  +HL
Sbjct: 90  TDNDVCFANRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVHL 135


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   EVCV-FRDIKPASRFHILTIPKRHIEDVKS 88
           +VC+   D KP S  H L IPKRH   +++
Sbjct: 92  DVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 2   EVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK---ELLNRMMSISRELLSKNNL 163
           +V  FRDI P +  HI+ IPK   + +  L+ A++   E+L  ++ +++ +  +  L
Sbjct: 214 KVLAFRDINPQAPTHIVIIPKVK-DGLTGLSKAEERHVEILGYLLYVAKVVAKQEGL 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,892
Number of Sequences: 37544
Number of extensions: 274549
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)