Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22f04
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    73   2e-13
Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    41   8e-04
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    32   0.29 
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    32   0.29 
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80455-8|AAB37886.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
 Frame = +2

Query: 11  VFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSKNNL------SIE 172
           V  DIKP ++ H L + K+HI     LT AD  LL  M    RELL ++        ++E
Sbjct: 33  VINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKKKGEADTVE 92

Query: 173 DA-RFGYHWPPFRSVKHLHLHTIAPESEMGFIGR 271
           D  R G+H PP  SV HLH+H I P S+MG I R
Sbjct: 93  DMLRIGFHLPPLLSVHHLHMHIIYPISDMGLISR 126


>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
 Frame = +2

Query: 2   EVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMM----SISRELLSKN--NL 163
           E   F D+ P +  H L IPKR I+ +++   +D  L+ ++M     ++++L   N   +
Sbjct: 41  EALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKLMVTASKVAKQLGMANGYRV 100

Query: 164 SIEDARFGYHWPPFRSVKHLHLHTI 238
            + + + G      +SV HLHLH +
Sbjct: 101 VVNNGKDG-----AQSVFHLHLHVL 120


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +2

Query: 11  VFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSK-NNLSIEDARFG 187
           VF ++KP +  H+L  PKR +  +  LT A+   L  +    + +L K +N++       
Sbjct: 320 VFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQ 379

Query: 188 YHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFVSPE 313
                 ++V H+H+H I P     F    I++K +     PE
Sbjct: 380 DGKDAGQTVPHVHIH-ILPRRAGDFGDNEIYQKLASHDKEPE 420


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +2

Query: 11  VFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSK-NNLSIEDARFG 187
           VF ++KP +  H+L  PKR +  +  LT A+   L  +    + +L K +N++       
Sbjct: 320 VFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQ 379

Query: 188 YHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFVSPE 313
                 ++V H+H+H I P     F    I++K +     PE
Sbjct: 380 DGKDAGQTVPHVHIH-ILPRRAGDFGDNEIYQKLASHDKEPE 420


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 217 TFASAYYSA*IRDGIHWKSDIQKKLLLVCFAGICRLYFNVKCNWSLNKLFY 369
           TFA  +Y+  +R G+H+   +  K++ +C   I  L  N +      + FY
Sbjct: 267 TFAMVFYAL-MRVGVHYIEYLLLKMIFICNPAIPNLSSNAQYKLEKGRSFY 316


>U80455-8|AAB37886.1|  337|Caenorhabditis elegans Hypothetical
           protein T01D1.5 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 47  ILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLH 226
           ++T+  R+I+ V+         +N + S+   LLSK      D  F     P  SV   +
Sbjct: 51  VVTLQTRYIDKVQENLILYNAAMNGLFSLCA-LLSKQEFLFGDRSFTIRAKPHSSVLAPY 109

Query: 227 LHTIAP 244
           +H I P
Sbjct: 110 IHCIQP 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,582
Number of Sequences: 27780
Number of extensions: 265699
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)