Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22f03
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 119 5e-28
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 46 7e-06
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 3.4
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 4.5
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.5
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 26 4.5
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 119 bits (286), Expect = 5e-28
Identities = 59/157 (37%), Positives = 92/157 (58%)
Frame = +2
Query: 221 NTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAER 400
++LDEPI+ T + RA+G K +VL P+ +L++WDLWGPL+ ++A L S ++
Sbjct: 55 DSLDEPIRVTLFNEFRAIGEKLVYVLYPKN-AQVLRDWDLWGPLIFSLVIALALALSTDK 113
Query: 401 ADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICR 580
+ + F V ++W G AV ++N KLLG NIS FQS+C+LGY FP+ +A I+C
Sbjct: 114 IERES----VFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCA 169
Query: 581 IILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGDS 691
+ L F+R+ + + + W FAA L +S
Sbjct: 170 FVP-------LIFIRIPVIVAMYAWTLFAAMGVLQNS 199
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 45.6 bits (103), Expect = 7e-06
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Frame = +2
Query: 197 SSGDNMEFNTLDEPIKETFMRDLRA----VGNKFYHVLIPREKTS--LLKEWDLWGPLLL 358
S G F+T P + + + +L + K HVL P + ++ + D+ GP+L
Sbjct: 42 SQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILF 101
Query: 359 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NISFFQSVCVL 535
C L +T L S G F ++ I +G+ + +L+ N+ F ++V VL
Sbjct: 102 CLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVL 152
Query: 536 GYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAAT-KFLG 685
GY L P+ + I F TF ++ + IW T+AA+ F+G
Sbjct: 153 GYSLLPLVV------IAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVG 197
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 501 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 355
PP++ +V+ A P+ + TS N P+L S L A P VAI R
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +2
Query: 224 TLDEPIKETF-MRDLRAVGNKFYHVLIPREKTSLLKEW----DLWGPLLLCTLMATILQG 388
TL+ +K F M D G+K HVL R S+L W DL P + L+ +L
Sbjct: 1077 TLNMALKSEFDMTDFNNSGSKLMHVLHARIFISVLHLWRSADDLHLPYITRALLTNVLSN 1136
Query: 389 SAERAD 406
+ D
Sbjct: 1137 CYQFED 1142
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 560 LALIICRIILFSAQNTFLFFLRLVISMIGF 649
+ L+IC+ +LF T LF + SM+GF
Sbjct: 30 IKLLICKFLLFHDFGTALFTSLVKASMLGF 59
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 206 LHWM-ALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFTN*IKCESYSFTL 51
LHW ++G + L + + C SQT + +FTN C+++ L
Sbjct: 252 LHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +1
Query: 565 AHHLPHH-TVQCAEHLPILPEAS 630
A ++PH+ + + ++HLP+LP+AS
Sbjct: 243 ATYIPHNPSKKSSQHLPLLPDAS 265
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 163 NYSHISRWIHVVFRVKRIHFNIIYLR 86
+Y H S W+H+++ R F LR
Sbjct: 290 HYFHYSEWLHMIYGFLRAQFVFFLLR 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,323
Number of Sequences: 5004
Number of extensions: 70018
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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