Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22f02
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 225 6e-60
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 115 5e-27
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 96 4e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 88 9e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 87 2e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 4e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 4e-18
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 82 8e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 78 1e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 72 9e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 70 3e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 67 2e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 4e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 66 4e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 65 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 61 1e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 61 1e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 60 4e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 5e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 6e-04
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 1.8
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 7.4
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 225 bits (549), Expect = 6e-60
Identities = 108/174 (62%), Positives = 128/174 (73%), Gaps = 2/174 (1%)
Frame = +3
Query: 150 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 329
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 330 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 509
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 510 SVFFGGMPIQKDEEVL--KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
+VF+GG+ I++D E K+ PHIVV TPGR+ A F+LDE
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDE 205
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 115 bits (277), Expect = 5e-27
Identities = 61/151 (40%), Positives = 90/151 (59%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 393 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 572
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 573 HIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
HIVVGTPGR+L F++DE
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVMDE 194
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 96.3 bits (229), Expect = 4e-21
Identities = 58/151 (38%), Positives = 77/151 (50%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 393 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 572
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 573 HIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
H+VVGTPGR+ F+LDE
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDE 169
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 88.2 bits (209), Expect = 9e-19
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +3
Query: 207 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 386
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 387 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 560
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 561 TACPHIVVGTPGRI 602
PH+VV TPGR+
Sbjct: 241 KH-PHVVVATPGRL 253
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 87.0 bits (206), Expect = 2e-18
Identities = 54/153 (35%), Positives = 73/153 (47%)
Frame = +3
Query: 207 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 386
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 387 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 566
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 567 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
H+V GTPGR+ ILDE
Sbjct: 140 -QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDE 171
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 86.2 bits (204), Expect = 4e-18
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = +3
Query: 180 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 359
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 360 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 530
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 531 PIQKDEEVLKTACPHIVVGTPGRIL 605
++ E+ L+ P IV+ TPGR +
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFI 392
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 86.2 bits (204), Expect = 4e-18
Identities = 47/131 (35%), Positives = 77/131 (58%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 393 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 572
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 573 HIVVGTPGRIL 605
H++V TPGR++
Sbjct: 166 HVLVCTPGRLM 176
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 81.8 bits (193), Expect = 8e-17
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Frame = +3
Query: 171 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 350
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 351 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 524
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 525 GMPIQKDEEVLKTACPHIVVGTPGRIL 605
G+ +++ +L + P IVV TPGR L
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFL 201
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 78.2 bits (184), Expect = 1e-15
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 389
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 390 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 554
Q++ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 555 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
L P IV+ TP R + ++DE
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDE 172
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 71.7 bits (168), Expect = 9e-14
Identities = 37/130 (28%), Positives = 71/130 (54%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 393 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 572
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 573 HIVVGTPGRI 602
H+VV TPGR+
Sbjct: 127 HVVVATPGRL 136
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.1 bits (164), Expect = 3e-13
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Frame = +3
Query: 228 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 407
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 408 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 572
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 573 HIVVGTPGRIL 605
IVV TPGR++
Sbjct: 543 EIVVCTPGRMI 553
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 67.3 bits (157), Expect = 2e-12
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 393 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 560
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 561 TACPHIVVGTPGRIL 605
+++V TPGR+L
Sbjct: 210 KGV-NLLVATPGRLL 223
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.1 bits (154), Expect = 4e-12
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Frame = +3
Query: 228 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 389
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 390 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 563
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 564 ACPHIVVGTPGRIL 605
HIVV TPGR+L
Sbjct: 375 GA-HIVVATPGRLL 387
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 66.1 bits (154), Expect = 4e-12
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 386
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 387 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 566
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 567 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
IV+GTPG ++ F+LDE
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 262
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.9 bits (151), Expect = 1e-11
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 8/179 (4%)
Frame = +3
Query: 153 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 326
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 327 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 488
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 489 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDE 665
S +R + +GG+P L I + TPGR+L +LDE
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLLDMLDSNKTNLRRVTYLVLDE 277
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.3 bits (142), Expect = 1e-10
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +3
Query: 264 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 425
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 426 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 602
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 61.3 bits (142), Expect = 1e-10
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Frame = +3
Query: 267 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 437
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 438 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTPGRILAX 611
TRELA Q YE + + G + V +GG P + K A +++GTPGR+L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLLDL 299
Query: 612 XXXXXXXXXXXXXFILDE 665
+LDE
Sbjct: 300 INDGSIDCSQVGYLVLDE 317
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 59.7 bits (138), Expect = 4e-10
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 393 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 560
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 561 TACPHIVVGTPGRIL 605
+I+V TPGR+L
Sbjct: 160 RM--NILVCTPGRLL 172
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 49.2 bits (112), Expect = 5e-07
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Frame = +3
Query: 213 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 392
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 393 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 539
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 540 KDEEVLKTACPHIVVGTPGRI 602
D + P +V+GTPGR+
Sbjct: 123 NDLASFREKNPSVVIGTPGRL 143
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.1 bits (87), Expect = 6e-04
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +3
Query: 285 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 461
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 462 SKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 605
++ E+ S S + + IQ+ L+ + +GTP R++
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY-DMCIGTPMRLV 178
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 330 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 461
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 344 LGLAKYVHTEDGLRNAFVLNFGRMLKTAINNSAE 243
LGL +HT D + L+ G +L+ A N AE
Sbjct: 147 LGLMNQIHTFDEISGVITLDSGVILENADNFLAE 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,443
Number of Sequences: 5004
Number of extensions: 56430
Number of successful extensions: 155
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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