Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e21
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1589 + 28070286-28070525,28072224-28072565                       25   6.2  
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065...    25   8.3  

>08_02_1589 + 28070286-28070525,28072224-28072565
          Length = 193

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 66  GMVDWNRFNLFCSSRPYLM 10
           G +D+N F  FC++ P LM
Sbjct: 57  GFIDFNEFISFCNANPGLM 75


>04_04_0794 +
           28104725-28104829,28105721-28105762,28106470-28106544,
           28106811-28106950,28107036-28107093,28107239-28107241,
           28107740-28107849,28108562-28108648,28108773-28108856,
           28109212-28109277,28109377-28109488,28109949-28110149
          Length = 360

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 98  FFWLMLFVTLWAWLIGIVSIYFVVL 24
           FF+L + V+ W + IGIV +  ++L
Sbjct: 198 FFYLGIVVSWWKFAIGIVLLVALIL 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,829
Number of Sequences: 37544
Number of extensions: 20922
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)