Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e17
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   4.6  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   6.1  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   6.1  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   8.1  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.1  

>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 344 QNLRRLLLEHGGQLFNVFLXFGGHFVDNLFQFXYVYIXDIRNAXEQLSRLLLGSFHFIYY 165
           +++ RLL  H    F V++   G FV  +F F Y  +    +  +     L+ +  + YY
Sbjct: 78  RDVERLLGSHRFASFCVYMFILGMFVTPIFSFLYSLLFKNLDYIQPGPTFLIFAILYQYY 137

Query: 164 F 162
           +
Sbjct: 138 Y 138


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +3

Query: 153 KDSKIIDEVKASEEKARKLFXGVPDIXNIDIXKLKEVINKMAAEXKKNVEELTTMLEKQP 332
           KD K   E K S+E + K     P    ++  K KE  NK   + KK+ ++      K+P
Sbjct: 215 KDKKEKKEGKPSQEASVKSVEKAPK--GLEGAK-KEKQNKKEKKDKKDKKDKKEKAPKEP 271

Query: 333 PK 338
           PK
Sbjct: 272 PK 273


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 258 EVINKM-AAEXKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 395
           +VI+K+ AA  K+N E +   +E +    LDA +AG   F   L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 243 IXKLKEVINKMAAEXKKNVEELTTMLEKQ 329
           +  LKE+  K+  + +KN E++ T+ +K+
Sbjct: 239 LLSLKEIHAKVTQQQRKNTEDVLTLRDKK 267


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 479 HLIFFECYVKFI 444
           HL+FFE Y KF+
Sbjct: 804 HLLFFEAYTKFL 815


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 162 KIIDEVKASEEKARKLFXGVPDIXNIDIXKLKEVINKMAAEXKKNVEELTTMLEKQPPKV 341
           K +DE+   E K +KL+ G     +    +L++   +M  E     + +   ++    +V
Sbjct: 316 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEV 375

Query: 342 LD-ALQAGASAF 374
            D  L+A  SAF
Sbjct: 376 DDERLKAEFSAF 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,483
Number of Sequences: 5004
Number of extensions: 20325
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)