Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e17
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    31   0.38 
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223...    27   8.1  

>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 307 NSSTFFFXSAAILLITSFNLXMSILXISGTPXNNFRAFSSEAFTSSIILES 155
           ++STFF    A+ L  +  + ++I+ ISGT   N  +F+  +  SS+ L S
Sbjct: 288 DASTFFLLENALALFIALLVNVAIVSISGTICANNLSFADTSTCSSLTLNS 338


>10_08_0999 +
           22121029-22121235,22121819-22122082,22122123-22122324,
           22122456-22122590,22122668-22122778,22122871-22122959,
           22123237-22123299,22123461-22123636,22123785-22123887,
           22124286-22124461,22124625-22124733,22124851-22124943,
           22126294-22126435,22126655-22126671
          Length = 628

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 96  FEKLQXDGKNSVDXX-IKWMKDSKIIDEVKASEEKARKLFXGVPDIXNID-IXKLKEVI 266
           +E ++   +N VD   + ++KD+K+I E+K   + A      +P I + D I  L+ +I
Sbjct: 273 WEDIKFGVENGVDFYAVSFVKDAKVIHELKDYLKSANADIHVIPKIESADSIPNLQSII 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,459,824
Number of Sequences: 37544
Number of extensions: 119176
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)