Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22e16
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 48 1e-06
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 44 2e-05
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.5
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 2.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.0
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 7.9
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/81 (30%), Positives = 48/81 (59%)
Frame = +1
Query: 460 QQPTIMSESITVPSWSCGRIIGSGGENVNDISHRSGARVKVESPKSTDKVAEHLVTFRGT 639
QQP + +++I++P+ G IIG GG +++I SG+++ + + + D+ E + T GT
Sbjct: 317 QQPKV-TQNISIPADMVGCIIGRGGSKISEIRRTSGSKISI-AKEPHDETGERMFTITGT 374
Query: 640 KEQIEVAKKLVENCISLERCR 702
E+ E A L+ + +E+ R
Sbjct: 375 HEENEKALFLLYQQLEMEKDR 395
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 44.4 bits (100), Expect = 2e-05
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Frame = +1
Query: 298 LIGRNGSNIKDLQKKSGAQ---------IHFKKF-TDQDYDVCVVRGRADTTQLAETLIH 447
LIG NGS +++ K+ G I F ++++ + V+RG + + ET +
Sbjct: 970 LIGPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEALETRLL 1029
Query: 448 DFIKQQPTIMSESITVPSWSCGRIIGSGGENVNDISHRSGARVKVESPKSTDKVAEHLVT 627
+ +++ + E I VP IIG G DI ++ + + P D +T
Sbjct: 1030 EIVEELKNQVEEKIEVPQRCISSIIGRMGSTRRDIERKTSTMLNI--PNVLDPEETVTIT 1087
Query: 628 FRGTKEQIEVAKKLVENCIS 687
G+ E E AK++++ ++
Sbjct: 1088 IVGSPENCEKAKEMIQEKVA 1107
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Frame = +1
Query: 262 IEIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKKFTDQDY------------DVCVVR 405
+ +++P LIG NG ++ L++K ++ F + D D V+R
Sbjct: 799 LRVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIR 858
Query: 406 GRADTTQLAETLIHDFIKQQPTIM-SESITVPSWSCGRIIGSGGENVNDISHRSGARVKV 582
G + A+ + + + + +I + +I +PS + R++G G V +I + ++ +
Sbjct: 859 GGKKSVAAAKQELLELYEYEKSIAYTSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDI 918
Query: 583 ESPKSTDKVAEHLVTFRGTKEQIEVAKK 666
ST++ V+ RG K +E A K
Sbjct: 919 -GDVSTEETTP--VSVRGAKADVENAIK 943
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 265 EIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKKFTDQDYDVCV-VRGRADTTQLAETL 441
+I VP+ + ++IGR GS +D+++K+ ++ D + V + + G + + A+ +
Sbjct: 1042 KIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEETVTITIVGSPENCEKAKEM 1101
Query: 442 IHDFIKQQPTIMSESITVP 498
I + + Q T M ITVP
Sbjct: 1102 IQEKVASQYTQM---ITVP 1117
Score = 38.7 bits (86), Expect = 8e-04
Identities = 28/101 (27%), Positives = 48/101 (47%)
Frame = +1
Query: 370 FTDQDYDVCVVRGRADTTQLAETLIHDFIKQQPTIMSESITVPSWSCGRIIGSGGENVND 549
+T VRG + + A + IKQ + +P+ RIIGSGG +N
Sbjct: 1173 YTGSSSSEWAVRGHKENVEKAIASLEKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINK 1232
Query: 550 ISHRSGARVKVESPKSTDKVAEHLVTFRGTKEQIEVAKKLV 672
I R A+VK++ P++ + +V +G++ + AK L+
Sbjct: 1233 I--RKIAQVKIDVPRTP---GDEIVVVQGSRAGVVKAKDLI 1268
Score = 37.1 bits (82), Expect = 0.002
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Frame = +1
Query: 259 TIEIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKKFTDQDYDVCVVRGRADTTQLAET 438
T I +P V ++GRNGS +++++ + +I + ++ VRG + A
Sbjct: 884 TSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKADVENAIK 943
Query: 439 LIHDFIKQQPTIMSESITVPSWSCGRIIGSGGENV-NDISHRSGARVKVESPK------S 597
I ++ ++ + I + +IG G + N I G+ K E+ +
Sbjct: 944 EISAIAEEVKNLVEKVIKIDREYHRYLIGPNGSKLQNTIKECGGSTDKTETARLISFSNG 1003
Query: 598 TDKVAEHLVTFRGTKEQIEVAK-KLVE 675
+ + V RG KE +E + +L+E
Sbjct: 1004 NSEEERNSVVLRGDKEIVEALETRLLE 1030
Score = 35.9 bits (79), Expect = 0.006
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Frame = +1
Query: 226 DNKTVKITKINTIEIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKK--FTDQDYDVCV 399
D K +I + E P +IG+NGSN+ L++ G QI+ ++ Q V
Sbjct: 720 DAKNHEILHSHVEEFDFPAQYSKNVIGKNGSNVSSLREDLGVQINVEEGHIRIQGIKKNV 779
Query: 400 VRGRADTTQLAETLIHDFIKQQPTIMSESITVPSWSCGRIIGSGGENVNDISHRSGARVK 579
A E LI D TI+ + +P+ ++IGS G+ V + + RV+
Sbjct: 780 EETAARIKSQIEALIDD------TIL--RVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVR 831
Query: 580 V----ESPKSTDK-----VAEHLVTFRGTKEQIEVAKK 666
+S ST + V RG K+ + AK+
Sbjct: 832 FPREDDSSNSTGNELMKPTSPDEVVIRGGKKSVAAAKQ 869
Score = 32.3 bits (70), Expect = 0.069
Identities = 17/93 (18%), Positives = 44/93 (47%)
Frame = +1
Query: 322 IKDLQKKSGAQIHFKKFTDQDYDVCVVRGRADTTQLAETLIHDFIKQQPTIMSESITVPS 501
++ + ++ +I+ + +++G+ + A I I ++ T +++ P
Sbjct: 177 VRTVMHQTSTRINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRET---KTMPCPV 233
Query: 502 WSCGRIIGSGGENVNDISHRSGARVKVESPKST 600
+ G IIG+ G+N+ I R+ R+++ +T
Sbjct: 234 FVVGAIIGTNGQNLKSIMDRTSTRIQIPKRNNT 266
Score = 31.1 bits (67), Expect = 0.16
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Frame = +1
Query: 298 LIGRNGSNIKDLQKKSGAQIHFKKFTDQDYDVCVVRGRADT-----------TQLAETLI 444
+IG G N++ L+ + ++ ++ ++D DV V AD LAE+ +
Sbjct: 578 VIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVIVCYIGADDGKSPDQIQKELADLAES-V 636
Query: 445 HDFIKQQPTIMSESITVPSWSCGRIIGSGGENVNDISHRSGARVKVESPK 594
+ I+SE I VPS I+G G +N I +S V V+ K
Sbjct: 637 KSSAEASAKIVSEIIQVPSVYHKHIVGPKGTTLNAIIGKSEENVIVQLGK 686
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 277 PKSIVPALIGRNGSNIKDLQKKSGAQIHFKK 369
P +V A+IG NG N+K + ++ +I K
Sbjct: 232 PVFVVGAIIGTNGQNLKSIMDRTSTRIQIPK 262
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 184 FVAYYVLKRDEEENDNKTVKIT--KIN-TIEIHVPKSIVPALIGRNGSNIKDLQKKSGAQ 354
F AYYVL++ DN V+ T +IN ++ P+ +V L +K +
Sbjct: 59 FAAYYVLRKPRTSPDNNYVEFTEKEINELVDDWKPEPLVAELTDVEKLELKSIPVLESVH 118
Query: 355 IHFK 366
+H K
Sbjct: 119 LHTK 122
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 360 MDLCTRFLLKVLNVGAIATNQSWNNAFRNMNFNCIYFSNLDCLVIVFFFISLED 199
MDLC R+ N I TN W+ +N I+ C+V+ ++ LED
Sbjct: 340 MDLCLRYCYSQSN--EIGTNVLWSMTTSFINIWRIHPGTCCCVVLSIYWPYLED 391
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 283 SIVPALIGRNGSNIKDLQKKSGAQI 357
+ + LIG G +KD++ KSGA+I
Sbjct: 201 NFIGLLIGPRGHTLKDMEAKSGAKI 225
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +1
Query: 388 DVCVVRGRADTTQLAETLIHDFIKQQPTIMSESITVPSWSCGRIIGSGGENVNDISHRSG 567
DV V +T+ K+Q + + +++PS +I+ +G +N SH++G
Sbjct: 27 DVTVSELNKQKRSPGQTVSKRLHKKQRVVSNPDLSLPSSPVKQILRNGLQNSKYGSHKTG 86
Query: 568 ARVKVESPKSTDKVAEHLVT 627
+ S S D A H T
Sbjct: 87 LE-RSASCSSIDASANHSST 105
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 86 CGIYRLSCLFHNTTNFTC 33
C IYRL+C +H T C
Sbjct: 106 CLIYRLACTYHTTAISLC 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,647
Number of Sequences: 5004
Number of extensions: 56358
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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