Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e13
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938           27   4.7  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   4.7  
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78...    27   6.2  
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    26   8.2  

>05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938
          Length = 252

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 169 NYFLGNHYRRSLTDRWSRAL-YQRDMRLTGNPYEV 270
           +Y LG HYRR        A+ Y   ++L GN  E+
Sbjct: 97  HYMLGEHYRRDFAVVVDEAVAYAETLKLAGNGKEI 131


>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 343  STHLLNTN*IIFYYFNYPG*LPSHSLHKDYQ*ASY-PSGTTHD 218
            ST L+  N +IFY F     L  H+L KD +   + P  TT+D
Sbjct: 949  STELILYNILIFYLFRRRHILQVHNLLKDMKSNGFSPDTTTYD 991


>10_01_0055 -
           785172-785997,786859-787394,787478-787695,787789-787891,
           788723-788770
          Length = 576

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 100 ILPTVAIITASIGLPGW 150
           +L  VA+IT S G PGW
Sbjct: 519 VLGAVAVITTSSGAPGW 535


>05_01_0578 +
           5180538-5181385,5182480-5182595,5183397-5183605,
           5184024-5184143,5184247-5184375,5184466-5184591,
           5185550-5185667,5186471-5186680,5186788-5187100,
           5187467-5187560,5187760-5187868,5188322-5188593,
           5188684-5188811,5188977-5189211,5189794-5189982,
           5190069-5190349,5190431-5190698,5190719-5190961,
           5191598-5191680,5192484-5192493
          Length = 1366

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 169 NYFLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIP 291
           N F+ NH + SL  RWSR   Q  + L        GL   P
Sbjct: 372 NVFIKNHAKVSLPLRWSRIQAQGQISLLSRATLTFGLTHYP 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,409,950
Number of Sequences: 37544
Number of extensions: 141466
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)