Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e11
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   1.7  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   2.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    24   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   4.0  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    24   4.0  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    23   5.3  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   9.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.2  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 100 LPTRAIKKKK-RFVRYMNKIK*FTQLRPSCSSRKVR 204
           +PT +++ KK R +R+ +  +   +L+PSC S   R
Sbjct: 572 IPTESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQR 607


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 123 KETFCTV-YEQNKIIHTTSTFVFFPKSP 203
           KE  C++ Y  N++   TS  +FF KSP
Sbjct: 142 KENKCSLLYPCNRLDRLTSGLMFFSKSP 169


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 159 IIHTTSTFVFFPKSPLCSMCCK*CDNKNQQRNKK 260
           +IH   T +   KS +   CC  C  + ++RN +
Sbjct: 299 VIHLVPTVLAGDKSSVVKTCCTRCLLRERKRNAR 332


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 157 LFCSYTVQNVSFFLLPV 107
           LFC  T   VSFF  PV
Sbjct: 49  LFCGITGGEVSFFFFPV 65


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 108 TGNKKKETFCTVYEQNKIIHTTSTFVFFPK 197
           TG+ K      V  Q  +  +T TF F+PK
Sbjct: 213 TGSPKDAIGLFVDSQGNVTRSTLTFSFYPK 242


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 39  SGSERYERR*PLTIRCAMCSSAYTGNKKKETFCTV 143
           +G+E  +    L ++C+ C + +  N  + T C V
Sbjct: 124 TGNEIIDEFDQLNLQCSACGTRFFNNDNENTRCYV 158


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -2

Query: 149 FIYRTKRFFFFIARVGRRTHGTPDGEWLPSLI 54
           F+  +   FF         HGTPD   L  L+
Sbjct: 17  FVDESNELFFSALSESSMNHGTPDDSILLDLV 48


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 152 LFIYRTKRFFFFIARVGRRTHGTPD 78
           ++IY +     F+  +G R HG+P+
Sbjct: 586 IWIYASLLVTCFVLALGNRPHGSPN 610


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 262 FFLLRC*FLLSHHLQHMEH 206
           FFLL    +LSH L H+ H
Sbjct: 157 FFLLYHQIILSHSLFHISH 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,897
Number of Sequences: 5004
Number of extensions: 22595
Number of successful extensions: 44
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)