Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22e11
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 32 0.055
12_02_0728 + 22606447-22606461,22606651-22606971,22607821-226079... 28 0.89
05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920 28 1.2
03_02_0604 + 9793057-9793165,9793360-9793445 27 2.7
02_03_0085 + 15063444-15063889,15064324-15065311 26 4.8
01_05_0812 + 25444351-25444658,25444967-25445231,25445303-254453... 26 4.8
05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183 25 6.3
04_01_0497 - 6522998-6523669,6523684-6523716 25 6.3
02_05_0400 + 28671562-28672219,28672365-28672441,28673679-286737... 25 6.3
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 25 8.3
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 32.3 bits (70), Expect = 0.055
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 129 TFCTVYEQNKIIHTTSTFVFFPKSPLCSMCCK*CDNKNQQRNKKK 263
T C Y Q + + PKS +CS CC C K ++++K+
Sbjct: 544 TGCCFYRQALYGYGPPSLPALPKSSVCSWCCCCCPKKKAEKSEKE 588
>12_02_0728 +
22606447-22606461,22606651-22606971,22607821-22607941,
22608041-22608193,22608754-22609424
Length = 426
Score = 28.3 bits (60), Expect = 0.89
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 154 FCSYTVQNVSFFLLPV*ADEHMAHLMVSGYRRSYRSEPLPTVNYSSSN 11
F + + N+SF L + +SGY EP P +++SSSN
Sbjct: 363 FTNICLSNISFSLADSTQSSSWSCSNISGYSELVFPEPCPDLHHSSSN 410
>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
Length = 139
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 87 AMCSSAYTGNKKKETFCTVYEQNKIIHTTST-----FVFFPKSPL 206
++CSS YT ++K C ++ I T ST +F+P P+
Sbjct: 2 SVCSSVYTLQREKHGICLGQKRGMFIQTQSTPNPQSLMFYPGKPV 46
>03_02_0604 + 9793057-9793165,9793360-9793445
Length = 64
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 42 GSERY-ERR*PLTI--RCAMCSSAYTGNKKKETFCTVYEQNKIIHTTSTF 182
GS R+ RR PL + RC+ S G K+ C V +++I +F
Sbjct: 6 GSGRFLARRPPLALAPRCSRGSPEKGGGSDKDMICVVDHSSRVIQAPDSF 55
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +3
Query: 123 KETFCTVYEQNKIIHTTSTFV-FFPKSPLCSMCCK*CDNKN 242
+ET ++ ++ TS P +P C+ C C N N
Sbjct: 248 EETIASIRATTAVLKATSPIAPMAPPTPACTKCLTECPNNN 288
>01_05_0812 +
25444351-25444658,25444967-25445231,25445303-25445384,
25446139-25446212,25446308-25446368,25446482-25446624
Length = 310
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 121 KKKRFVRYMNKIK*FTQLRPSCSSRKVRCVPCVANDVTIKISSV 252
K+K+ ++ + + + SC RK +PCVA + +K SS+
Sbjct: 4 KRKQCIKRRHDAERNLRKPSSCLVRKPPGIPCVARNKKVKYSSL 47
>05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183
Length = 204
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 251 TLLIFIVTSFATHGTQRTFREEHEGRSCVNYFIL-FIYRT 135
+LL F+V HG R F E R V +L FIY T
Sbjct: 72 SLLAFVVMGANDHGDWRQFEHYEEYRYVVAIGVLAFIYTT 111
>04_01_0497 - 6522998-6523669,6523684-6523716
Length = 234
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 52 GMSDGNHSPSGVPCVRLP 105
G DGNH G C+ LP
Sbjct: 202 GSDDGNHGSHGDVCIELP 219
>02_05_0400 +
28671562-28672219,28672365-28672441,28673679-28673730,
28673851-28674008
Length = 314
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 241 FLLSHHLQHMEH 206
FL SHHLQH +H
Sbjct: 147 FLQSHHLQHHQH 158
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 248 LLIFIVTSFATHGTQRTFREEHE--GRSCVNYFILF 147
L + + F HGTQ FR+ H+ G S + I+F
Sbjct: 471 LPLVAIVEFILHGTQAYFRDRHKKIGPSMADNNIVF 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,366,494
Number of Sequences: 37544
Number of extensions: 141657
Number of successful extensions: 330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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