Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22e10
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.22
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 29 0.89
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 3.6
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 3.6
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 4.8
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 26 6.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 6.3
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 6.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 8.3
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 8.3
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 25 8.3
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 382 HPPLHHPVPQTSQQ-LHHDPRKTKPNHYVP 468
HPPLH+P+P + Q L P P+H+ P
Sbjct: 138 HPPLHNPLPVSCQPVLRPPPVPQVPSHWYP 167
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 484 SACDSQRQSPHGHTPRTRTNSTRKRKPSSYGTGSAYDDDEEDS 612
S S +P HT ++ R K S GS+ DDDEE S
Sbjct: 3 STAGSDASTPTNHTVSSKKRRGRPPKGSYAAYGSSDDDDEEYS 45
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 493 DSQRQSPHGHTPRTRTNSTRKRKPSSYG 576
D Q+ +GH P TN+T +K ++ G
Sbjct: 385 DKNSQNDNGHGPTMETNTTENQKDNARG 412
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 24 KVTSDNLEIYFILINI*NSVPFNRFVGICICKSKGYCA*IIKKHNSS 164
K T LE+Y ++ ++PF + GI + ++ + +K+H+SS
Sbjct: 411 KRTKVRLEMYDDCCHVVTALPFVKEAGIMVRRAANFAYWCLKQHDSS 457
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 419 SNSIMIRGKQNPITTFLKTMRYRRATRS 502
SNS+ + G +P +T + YRR T+S
Sbjct: 374 SNSLSMNGSLSPSSTNVPLQSYRRTTKS 401
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 391 LHHPVPQTSQQLHHDPRKTKPNHYVPENYEISACDSQRQSPHGHTPRTRTNSTRKRKPSS 570
L+ P+P+ +L RK Y P +Y A S T +S + +P+S
Sbjct: 143 LYPPIPK--DELVEAYRKELIRTYFPNDYPKEANKDIPSSAEADTMLNLESSENREQPTS 200
Query: 571 YGTGSAYDDDEE 606
+ +DDE+
Sbjct: 201 LKEENTQEDDEK 212
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 212 HEFALVPQQSILFNTSTRVMFFDNLSTISL*FTDTNTDEPVEWYG 78
H ++V QQS + + T + DNL+ T TN DE V W G
Sbjct: 684 HYISVVTQQSPIESRFTDRLV-DNLNAEVSLGTVTNIDEAVSWLG 727
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 535 ESAACVRVETGAASRTPISHSFQERSDW 452
E C+ + +A+R P SH DW
Sbjct: 208 EQIICISLNPNSAARPPFSHHIVYSDDW 235
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -2
Query: 601 RRHHKRFQFHRTMVSVYEYCWSESAACVRVETGAASRTPISHSFQERSDWV 449
++H FH ++ A VR ET S TP+ + Q+ W+
Sbjct: 511 KQHRLAQMFHPVLIEAMRQAIPSDALTVRSETFGESNTPL--TLQQWHKWI 559
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 490 CDSQRQSPHGHTPRTRTNSTRKRKPSSYG 576
C+ R++ H+P ++T+++ K YG
Sbjct: 547 CEPIRKTDESHSPNSKTDNSSTHKQELYG 575
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 335 PTPPSGVISYACIALGFACPRCDVLASS-IKSAIPRIRPWKLHEFALVPQQSILFNT 168
P PS V + + L A R ++L + I+S PR+ P + E P Q +F+T
Sbjct: 409 PKIPSFVPTQTTVFL-MALHRLEILVQALIESGWPRVLPVCIAERVSCPDQRFIFST 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,262
Number of Sequences: 5004
Number of extensions: 52181
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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