Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e07
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377...    32   0.58 
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569...    29   4.1  
12_02_0520 - 19951590-19952174                                         28   9.4  
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           28   9.4  

>11_01_0488 +
           3770410-3770774,3771197-3771284,3771383-3771466,
           3772128-3772224,3772324-3772411,3772800-3772848,
           3773044-3773238,3773713-3774159
          Length = 470

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 155 IMFSRTLNVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSRQALKPDPL 310
           ++F   L++SA +     F+  W PPK     +NS H          + DP+
Sbjct: 245 VIFDYALHISARMVSAVAFDSYWSPPKPYERKQNSMHRFASPKSDEAEEDPI 296


>03_05_0564 -
           25655095-25655106,25656089-25656541,25656886-25656962,
           25657058-25657149,25657447-25657553,25657662-25657747,
           25657861-25657977,25658205-25658288,25658400-25658479,
           25658958-25659132,25659455-25659521,25660175-25660236,
           25660369-25660450,25660890-25661312,25661514-25661610,
           25662055-25662095,25662673-25662837
          Length = 739

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +2

Query: 377 VGVSAASLLGCVIWEYENLRVHASSLLRRPGTWLTAQQKKSKSEPGPLKK-----WWNSL 541
           V +S+ S+ GCV+W  E  +  A+             +++ + E   LKK     WW  L
Sbjct: 316 VVLSSPSMPGCVLWGNEIEKACATGGAVAWEVGAVKWRERMEEEGDKLKKIWRAQWWQQL 375

Query: 542 RDNEKVFYPILAANLLV 592
             N  V Y  +  N LV
Sbjct: 376 LINSIVGYDTILTNSLV 392


>12_02_0520 - 19951590-19952174
          Length = 194

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 542 VVSSTIFSMDQALIYFFFVVQSATFLVFVVVKKREPVDSHIPI 414
           VV+ ++FS DQA+ Y      +A     VV K+ +P    +P+
Sbjct: 90  VVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPV 132


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 140 IKIK*IMFSRTLNVSANICKPPLFNQVWLPPKN 238
           I+ K ++ S++L +  + C P  F   WL P N
Sbjct: 548 IRSKRVLMSKSLEMRTDFCYPSQFLHSWLLPSN 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,730,726
Number of Sequences: 37544
Number of extensions: 422625
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)