Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e07
         (769 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated, ...   102   1e-21
AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated ...   102   1e-21
BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated, ...    92   2e-18

>BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 379

 Score =  102 bits (245), Expect = 1e-21
 Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 5/147 (3%)
 Frame = +2

Query: 284 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 463
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 464 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 637
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 638 YFCSNPSGGAVCLPMVL---SHSAIIH 709
           YF SNP+   +C PM+L   SH ++ H
Sbjct: 195 YFTSNPASKVLCSPMLLSTFSHFSLFH 221



 Score = 35.1 bits (77), Expect = 0.28
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +1

Query: 691 TFSHYSPLHLAANMYVLYS 747
           TFSH+S  H+AANMYVL+S
Sbjct: 213 TFSHFSLFHMAANMYVLWS 231


>AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated
           rhomboid-like protein protein.
          Length = 379

 Score =  102 bits (245), Expect = 1e-21
 Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 5/147 (3%)
 Frame = +2

Query: 284 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 463
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 464 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 637
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 638 YFCSNPSGGAVCLPMVL---SHSAIIH 709
           YF SNP+   +C PM+L   SH ++ H
Sbjct: 195 YFTSNPASKVLCSPMLLSTFSHFSLFH 221



 Score = 35.1 bits (77), Expect = 0.28
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +1

Query: 691 TFSHYSPLHLAANMYVLYS 747
           TFSH+S  H+AANMYVL+S
Sbjct: 213 TFSHFSLFHMAANMYVLWS 231


>BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 329

 Score = 92.3 bits (219), Expect = 2e-18
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
 Frame = +2

Query: 284 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 463
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 464 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 637
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 638 YFCSNPSGGAV 670
           YF SNP+   +
Sbjct: 195 YFTSNPASSVI 205


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,779,844
Number of Sequences: 237096
Number of extensions: 2474156
Number of successful extensions: 4519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4516
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)