Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e07
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23518-1|AAC70883.1|  124|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    28   6.4  
AC024810-14|AAF60768.2|  165|Caenorhabditis elegans Rhomboid (dr...    28   6.4  

>U23518-1|AAC70883.1|  124|Caenorhabditis elegans Hypothetical
           protein F21D12.2 protein.
          Length = 124

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 170 TLNVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSRQALKPDPLENLHIETG 334
           T+ +   I K  LF   +  P     +   F++SKR  +   +PD LEN  +E G
Sbjct: 9   TIKLIRRIRKCLLFFMPFFMPTYAYYLSAFFYSSKRRKKNDFRPDCLENTVVEQG 63


>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 740 RTYILAARCNGE*WLNVKEPSED 672
           R  I+ A+CNG  + N+ EPS D
Sbjct: 547 RPTIIVAKCNGRAYTNLHEPSSD 569


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 740 RTYILAARCNGE*WLNVKEPSED 672
           R  I+ A+CNG  + N+ EPS D
Sbjct: 547 RPTIIVAKCNGRAYTNLHEPSSD 569


>AC024810-14|AAF60768.2|  165|Caenorhabditis elegans Rhomboid
           (drosophila) related protein5 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 694 FSHYSPLHLAANMYVLYSXXP 756
           FSH S +HL  NMYVL +  P
Sbjct: 6   FSHSSIIHLGLNMYVLSTFAP 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,734
Number of Sequences: 27780
Number of extensions: 372819
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)