Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e05
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    33   0.038
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.4  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   4.4  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.7  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLPNKH 323
           I  P+ A+IN  SNIT  A+S+P P+  P    S V  +   P +S     T++    K 
Sbjct: 387 IPVPEEASINEHSNITDEAVSLPEPVY-PNAPTSAVSVH--NPTISDEAEPTERAFLKKE 443

Query: 322 NP 317
            P
Sbjct: 444 KP 445


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -2

Query: 496 APKAANINPRSNITPPAISVPSPLSDPVGV 407
           AP   NI  RS  TPP I  P P   PV V
Sbjct: 255 APPVLNIGDRSLETPPPIPSPRP-PQPVAV 283


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 379 MPAMSSAKPITQKVLPNKHNP 317
           MP +SS +PI Q  LPN+ +P
Sbjct: 140 MPILSSNQPIQQLPLPNQASP 160


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 522 GGKEAPSSGAAGLTALNPSTDPLVAAQY 605
           GG   P+S ++G T++ P  DP ++  +
Sbjct: 81  GGMTMPASSSSGATSVPPEQDPSLSVSF 108


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 451 PAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLPNKHNPM 314
           P+  V SPLS    V + + +Y T  ++++  PIT+  L    N M
Sbjct: 42  PSELVESPLSMLKDVATLIHQYTTKLSVAAKPPITRDALEKYANDM 87


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 454  PPAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLP 332
            P A S P+P+++PV            PAM +    TQ   P
Sbjct: 1003 PAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAP 1043


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 481  NINPRSNITPPAISVPSPLSDPVGVVSGVFEYCTMPAM 368
            N+    +  PP I   S +  P  ++S VF++C + ++
Sbjct: 1488 NVEKAESFEPPVILSQSDVKIPDSLLSEVFDHCRIVSL 1525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,639
Number of Sequences: 5004
Number of extensions: 49095
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)