Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22e05
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    32   0.33 
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical ...    31   0.77 
U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   2.3  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    29   3.1  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   3.1  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   3.1  
AF047656-8|AAC05109.2|  340|Caenorhabditis elegans Ligand-gated ...    29   3.1  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   9.4  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   9.4  
AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    27   9.4  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    27   9.4  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    27   9.4  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 213 VTYEQQPNDQRWNCPISYFSRRVTSSLNRAVCLRIGLCLLGSTFCVIGLALLIAGIVQYS 392
           VT  Q      W+CP    S + TS++   + +   LCL+ + F V   A +I GI  +S
Sbjct: 46  VTMAQSNLQCEWDCPCVGASSKRTSAIIEGLFVIQVLCLIAAFFLVFASAAMIYGIHTWS 105


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 551 RTTAGRLLAACQPRRPYPSTESGKY*SKKQYNTTRNQR 438
           R T  R LA C PRRP+  T+S    +K   NT  N R
Sbjct: 335 RMTEFRRLACCNPRRPWNRTKSFSQMNKSFANTRSNVR 372


>AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical
           protein Y26D4A.3 protein.
          Length = 138

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 207 TTVTYEQQPNDQRWNCPISYFSRRVTSSLNRAVCLRIGLCLLGSTFCVIGLALLIAGIVQ 386
           + VT+  Q   QR    IS  +RR+ +  NR++      C+  S F VIGL + I   + 
Sbjct: 52  SAVTFSNQECQQRNQVVISRRARRINNCRNRSIS-----CIEWSCFSVIGLVIFIVVFLS 106

Query: 387 YSNTP 401
               P
Sbjct: 107 VRRLP 111


>U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical
           protein T24C12.1 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 449 GWCYIASWINIC-RFRCLDMVVAADRRQGGAQQWCGWADC 565
           G+C+I    NIC    C+  +VA  +RQ G   +C W  C
Sbjct: 120 GYCFI----NICLALLCIASIVAIRKRQIGVVVFCHWIKC 155


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLPN 329
           +  P      P + +T P+  V SP++ P  VV+      T+P+ +  KP T    P+
Sbjct: 283 VTGPTTVVTVPTTVVTIPSTVVTSPITTPSTVVTVPSTVVTVPSTAVTKPSTVVTAPS 340


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 466 SNITPPAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLPNKHNPMRKQT 302
           S   PP   VP  +  PV V+SG     T    + +  +  + +P +  P R  T
Sbjct: 789 STSVPPVTIVPPAIQQPVVVISGAAPQFTQQQTTHSPALIAQPIPQQLIPQRVST 843


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 466 SNITPPAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLPNKHNPMRKQT 302
           S   PP   VP  +  PV V+SG     T    + +  +  + +P +  P R  T
Sbjct: 789 STSVPPVTIVPPAIQQPVVVISGAAPQFTQQQTTHSPALIAQPIPQQLIPQRVST 843


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 466 SNITPPAISVPSPLSDPVGVVSGVFEYCTMPAMSSAKPITQKVLPNKHNPMRKQT 302
           S   PP   VP  +  PV V+SG     T    + +  +  + +P +  P R  T
Sbjct: 789 STSVPPVTIVPPAIQQPVVVISGAAPQFTQQQTTHSPALIAQPIPQQLIPQRVST 843


>AF047656-8|AAC05109.2|  340|Caenorhabditis elegans Ligand-gated ion
           channel protein 5 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 203 TYDGNVRAAA**STVELS-HQLLFTTCDK*SEPGRLFAHRIVFIGQHFLRYWFGTAHSWH 379
           TYD NV+ +   +TV ++ +  L  + D+  E         +   Q FL  W+     W+
Sbjct: 39  TYDVNVKPSDTLTTVTITPNTFLLLSMDQTQET--------ILFSQEFLLKWYDPILHWN 90

Query: 380 RTVFEHTR 403
           RT+F++ R
Sbjct: 91  RTLFDYNR 98


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 666 YCP*GCASHRQERAG-RLGRAHTEPPPGGPWTGLGQSAQPHHCWAPPCRLSAATT 505
           YCP  C   + +R     G +  +PPP G     G  A P     P  R   ATT
Sbjct: 273 YCP--CPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATT 325


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 512 RRPYPSTESGKY*SKKQYNTTRNQRSQPIV 423
           RR  PS ++ +  S+KQY+  R ++S P+V
Sbjct: 457 RRRSPSPDNRQLGSRKQYSPLRRRQSSPMV 486


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 512 RRPYPSTESGKY*SKKQYNTTRNQRSQPIV 423
           RR  PS ++ +  S+KQY+  R ++S P+V
Sbjct: 457 RRRSPSPDNRQLGSRKQYSPLRRRQSSPMV 486


>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPL 425
           + AP A  I P  ++ PP +SVP P+
Sbjct: 272 LPAPAANMIPPNFSVPPPNLSVPPPM 297


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPL 425
           + AP A  I P  ++ PP +SVP P+
Sbjct: 415 LPAPAANMIPPNFSVPPPNLSVPPPM 440


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPL 425
           + AP A  I P  ++ PP +SVP P+
Sbjct: 443 LPAPAANMIPPNFSVPPPNLSVPPPM 468


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPL 425
           + AP A  I P  ++ PP +SVP P+
Sbjct: 501 LPAPAANMIPPNFSVPPPNLSVPPPM 526


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 502 IQAPKAANINPRSNITPPAISVPSPL 425
           + AP A  I P  ++ PP +SVP P+
Sbjct: 502 LPAPAANMIPPNFSVPPPNLSVPPPM 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,199
Number of Sequences: 27780
Number of extensions: 309213
Number of successful extensions: 1060
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)