Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d24
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    79   2e-16
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   0.65 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   1.1  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   1.5  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    24   4.6  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    24   4.6  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    24   6.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   6.1  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    24   6.1  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    24   6.1  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    23   8.1  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    23   8.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    23   8.1  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 78.6 bits (185), Expect = 2e-16
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
 Frame = +1

Query: 82  RYPFQNQTRACYDNYCDYFKCTRLLGE-VDDCKIFKRYYETICPNYWISHWDEQREKGIF 258
           R+P  NQT+ C+ +Y DYF+C +  GE    CK F   Y+++CP  W+  WDEQRE G F
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79

Query: 259 PGPI 270
           P PI
Sbjct: 80  PAPI 83


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +2

Query: 23  RI*IFLQCAIKNLELCVSTRGTL-SRTKPGRVTI--TTVIISNAPVSSA--KLMIAKYSR 187
           R+   LQC +K+ +LC+    TL S  K  +  +  T+ II+  P   A   L  A Y+ 
Sbjct: 148 RVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLYYTSFIINEFPFEQAFEILSNALYAL 207

Query: 188 DITKLY 205
           D  + Y
Sbjct: 208 DNVQTY 213


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 276 QLNRSWENALLTLFIPMRDPIIRAYS 199
           QL RSW   +   F+P   P++RA S
Sbjct: 453 QLPRSWAIYVREAFVPQNHPVLRAPS 478


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 115 YDNYCDYFKCTRLLGEVDDCKIFK 186
           +D Y D F+C  ++ E  DC +++
Sbjct: 100 FDLYIDQFRCLHIVMEFLDCNLYQ 123


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 163 LRRGDGCI*NNHSSYRNTPWFGS 95
           LR+GD  I  N SS    PW  S
Sbjct: 335 LRKGDTVIATNFSSVSGMPWIKS 357


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 63  NFAYRPAVPFPEPNQGVLR*LL*LFQMHPSPRRS**LQNIQEILRNY 203
           ++ Y P +    P  G+ R  L  F + P P ++  L N++ I++++
Sbjct: 209 DYGYSPLINTGNPTSGLKRKALKQFPLPPDPCQA--LANLRPIVKSF 253


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 154 LGEVDDCKIFKRYYETICPNYWISHWDEQ 240
           LGE ++ +    Y   +  N   +HWDE+
Sbjct: 615 LGETEEAEKLAGYENAMLRNLEDNHWDEE 643


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 202 ICPNYWISHWDEQREK 249
           +  N W+ HW E+  K
Sbjct: 918 VATNVWLKHWSEENGK 933


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 74  STRGTLSRTKPGRVTITTVIISNAPVSSAKLMIAKYS 184
           S  GT+   +P   T+TT + S + V +  L  A  S
Sbjct: 817 SVTGTVEVVEPAAGTVTTTVYSGSEVYTTTLASASES 853


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 4   YHYIRDK-NLD-FFTMCDQEFRTLRIDPRYPFQNQTRACYDNYCDYFKCTRLLGEVDDCK 177
           YH   DK N D    +C    R L   P + F +  RA      +Y     +LG    C 
Sbjct: 356 YHLANDKGNADAMLALCKLYLRGL---PGHIFPSSRRAF-----EYAHRAAMLGHAPACY 407

Query: 178 IFKRYYET 201
           +  ++YET
Sbjct: 408 VLGKFYET 415


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 258 ENALLTLFIPMR-DPIIRAYSFVISLEYFAI 169
           EN +  +F   + DP +R+  F +++ YF +
Sbjct: 178 ENCVRLIFFGRKYDPFLRSRMFTLTIRYFLL 208


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 265 VLGKCPSHAVHPNERSNN 212
           V G C    VHPNE+ N+
Sbjct: 213 VAGDCKITLVHPNEQPNS 230


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 208 PNYWISHWDEQ 240
           PN W++ WDE+
Sbjct: 10  PNGWVAQWDER 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,935
Number of Sequences: 5004
Number of extensions: 26790
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)