Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22d24
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 82 8e-17
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 81 2e-16
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 58 2e-09
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 47 4e-06
05_05_0240 + 23548408-23549408,23549882-23549980,23550282-235503... 27 2.3
03_02_0847 + 11721847-11722294,11723043-11723108,11723276-117233... 27 2.3
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136... 27 3.1
06_03_0380 + 20079366-20079605,20079943-20080341 27 3.1
05_01_0390 + 3045344-3045362,3046453-3046531,3046645-3046703,304... 27 3.1
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971... 26 5.4
07_03_1736 + 29130118-29130294,29130649-29130703,29130837-291310... 26 7.2
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 26 7.2
05_06_0163 - 26082276-26082369,26082751-26082814,26082899-260829... 26 7.2
05_05_0223 - 23406814-23407477,23407597-23407919 26 7.2
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 26 7.2
12_02_1226 - 27182423-27182768,27182855-27183765 25 9.5
05_03_0124 - 8685262-8685362,8685765-8686459,8686614-8686789,868... 25 9.5
04_01_0236 - 3069062-3069625,3070339-3070386 25 9.5
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 82.2 bits (194), Expect = 8e-17
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 55 EFRTLRIDPRYPFQNQTRACYDNYCDYFKCTRLLGE-VDDCKIFKRYYETICPNYWISHW 231
+ T D R+P NQTR C+ Y +Y +C GE +C+ F +YY ++CP+ WI W
Sbjct: 183 KIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERW 242
Query: 232 DEQREKGIFPGPI 270
+EQRE G FPGP+
Sbjct: 243 NEQRENGTFPGPL 255
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 80.6 bits (190), Expect = 2e-16
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 55 EFRTLRIDPRYPFQNQTRACYDNYCDYFKCTRLLGE-VDDCKIFKRYYETICPNYWISHW 231
+ T D R+P NQTR C+ Y +Y +C GE +C F +YY ++CP W+ W
Sbjct: 97 KIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERW 156
Query: 232 DEQREKGIFPGPI 270
+EQRE G FPGP+
Sbjct: 157 NEQRENGTFPGPL 169
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 55 EFRTLRIDPRYPFQNQTRACYDNYCDYFKCTRLLGEVD-DCKIFKRYYETICPNYW 219
E +T D R+P NQTR C+ Y +Y +C GE DC+ F +YY ++CP W
Sbjct: 20 EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 46.8 bits (106), Expect = 4e-06
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 142 CTRLLGE-VDDCKIFKRYYETICPNYWISHWDEQREKGIFPGPI 270
C GE D+C + + Y ++CP WI W EQR G F GP+
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAGPL 51
>05_05_0240 +
23548408-23549408,23549882-23549980,23550282-23550354,
23550416-23550478
Length = 411
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 124 YCDYFKCTRLLGEVDDCKIFKR 189
Y C R LG +D CKIF R
Sbjct: 216 YNTVINCLRRLGRLDQCKIFAR 237
>03_02_0847 +
11721847-11722294,11723043-11723108,11723276-11723358,
11723585-11723673,11723783-11723906
Length = 269
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 145 CI*NNHSSYRNTPWFGSGKGTAG 77
C+ N H++ R T W+G AG
Sbjct: 216 CVYNTHTASRGTAWYGGAAPAAG 238
>11_06_0102 +
20112731-20112928,20113314-20113514,20113606-20113695,
20114269-20114457,20115375-20115387,20115824-20115990,
20117334-20117522,20118940-20119053,20120912-20121010,
20122368-20122490,20122579-20122701,20123179-20123277,
20124786-20124842,20125136-20125182,20125296-20125439,
20125540-20125717,20126318-20126398,20126480-20126563,
20126624-20126629
Length = 733
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 87 PFPEPNQGVLR*LL*LFQMHPSPRRS**LQNIQEILRN 200
PFPE VL+ L+ Q+HPS R ++ I++ +RN
Sbjct: 570 PFPECTSSVLQALVLFKQLHPSYR----IKEIEKCVRN 603
>06_03_0380 + 20079366-20079605,20079943-20080341
Length = 212
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 52 QEFRTLRIDPRYPFQNQTRACYDNYC 129
Q + LR P PF+ + CY+N C
Sbjct: 174 QFYAELRYSPLKPFERKVCRCYENRC 199
>05_01_0390 +
3045344-3045362,3046453-3046531,3046645-3046703,
3046799-3047067,3048074-3048169
Length = 173
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 219 PIIRAYSFVISLEYFAIINFAEETGAFEIITVVIVTRP 106
P++ A+ F+ SL +NF ++ + + V+ V +P
Sbjct: 129 PLVNAHKFISSLHQITSVNFYQQQSSQPLNNVLYVLQP 166
>02_02_0393 -
9711835-9712388,9712438-9712657,9713007-9713271,
9713409-9713476,9713587-9714209,9714307-9714462,
9714551-9714648,9714734-9714825,9714928-9715017
Length = 721
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 124 YCDYFKCTRLLGEVDDCKIF 183
Y +F CT LG DDC+ +
Sbjct: 587 YTKFFNCTLTLGPKDDCESY 606
>07_03_1736 +
29130118-29130294,29130649-29130703,29130837-29131048,
29131201-29131322,29131406-29131559,29131849-29131918,
29132007-29132152,29132238-29132310,29132366-29132418,
29132514-29132658,29132945-29133063,29133171-29133242,
29133336-29133439,29133695-29133751,29133861-29134059,
29134169-29134312,29134418-29134537
Length = 673
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 169 DCKIFKRYYETICPNYWISHW 231
D +F + CPNYW+ H+
Sbjct: 524 DAIVFNSWQNYGCPNYWMLHF 544
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 130 HSSYRNTPWFGSGKGTAGRY 71
H++YR + W +G G GRY
Sbjct: 613 HTTYRVSAWVRAGSGGHGRY 632
>05_06_0163 -
26082276-26082369,26082751-26082814,26082899-26082972,
26083644-26083759,26084644-26084909,26085002-26085092
Length = 234
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 225 RDPIIRAYSFVISLEYFAIINFAEETGAFEIITVVIVTRPGLV-LERVPRVDTQSSKFL 52
R ++ A +FV++L + F E AF I + P LV L+R VD + +++
Sbjct: 96 RHVVLVAAAFVLALLFNERFTFREICWAFSIYLEAVAILPQLVLLQRSRNVDNLTGQYV 154
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 119 ITTVIISNAPVSSAKLMIAKYSRDITKLYALIIGS 223
++ I+ P +++ ++A+ +LYAL++GS
Sbjct: 6 VSLAAIAGKPTAASAQLVAEGRESAARLYALLVGS 40
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 169 DCKIFKRYYETICPNYWISHW 231
D +F + CPNYW+ H+
Sbjct: 514 DAIVFNSWQHYGCPNYWMLHF 534
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 163 LRRGDGCI*NNHSSYRNTPWFGSGK 89
LRRGD + ++H Y FG+GK
Sbjct: 319 LRRGDCQLEHSHGPYGENMMFGTGK 343
>05_03_0124 -
8685262-8685362,8685765-8686459,8686614-8686789,
8686939-8686982,8687096-8687102
Length = 340
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 246 LTLFIPMRDPIIRAYSFVISLEYFAIINFAEETGAFEIITV 124
+T +PM+DP A V L + AEE GA+ + V
Sbjct: 173 ITSTVPMKDPFFAAMKSVNYLANALAMAEAEERGAYASVWV 213
>04_01_0236 - 3069062-3069625,3070339-3070386
Length = 203
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 62 ELCVSTRGTLSRTKPGRVTITTVIISNAPVSSAKLM 169
E C R PGRVTI+T ++ VS L+
Sbjct: 22 ECCGGRRRCRGGGSPGRVTISTYLMQEGAVSCTYLI 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,149,147
Number of Sequences: 37544
Number of extensions: 160932
Number of successful extensions: 357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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