Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d24
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   2.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   2.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   4.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   4.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 178 IFKRYYETICPNYWISHW 231
           +F R +  IC    I HW
Sbjct: 275 VFMRIFNLICMMLLIGHW 292


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 178 IFKRYYETICPNYWISHW 231
           +F R +  IC    I HW
Sbjct: 243 VFMRIFNLICMMLLIGHW 260


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 89  LSRTKPGRVTITTVIISNAPVSSAKLMIAKYSRDITK 199
           + R  PG+ TITTV +    ++   +++ + + + +K
Sbjct: 124 IHRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSK 160


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 89  LSRTKPGRVTITTVIISNAPVSSAKLMIAKYSRDITK 199
           + R  PG+ TITTV +    ++   +++ + + + +K
Sbjct: 135 IRRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSK 171


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 110 ALVWFWKGYRGSIRK 66
           A+ + WK   G++RK
Sbjct: 213 AITYVWKNDEGTLRK 227


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 110 ALVWFWKGYRGSIRK 66
           A+ + WK   G++RK
Sbjct: 213 AITYVWKNDEGTLRK 227


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 110 ALVWFWKGYRGSIRK 66
           A+ + WK   G++RK
Sbjct: 264 AITYVWKNDEGTLRK 278


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 110 ALVWFWKGYRGSIRK 66
           A+ + WK   G++RK
Sbjct: 213 AITYVWKNDEGTLRK 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,978
Number of Sequences: 438
Number of extensions: 1973
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)