Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22d19
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 32 0.034
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 29 0.32
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 29 0.32
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 3.9
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 3.9
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 25 3.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 25 5.2
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 24 6.9
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 9.1
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 24 9.1
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 24 9.1
>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 92
Score = 31.9 bits (69), Expect = 0.034
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 91 RGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIYKYVEEAHHASL 270
+GI+ Y +SP +Q+ AG N R++ Y P I IY + +E +
Sbjct: 23 KGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNEFLN 82
Query: 271 RKDPRDFMDE 300
K R ++E
Sbjct: 83 SKHGRHLVEE 92
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.32
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Frame = +1
Query: 49 KFRMGKHFGELGFIRGIVY---YKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAI 219
++ + F E G IR Y YK+ GA+ KG+P+ + Y + +
Sbjct: 12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSS 71
Query: 220 IGTCIYK-----YVEE-----AHHASLRKDPRDFMDEVDPN 312
+G IYK Y+E+ H K +DF+D V N
Sbjct: 72 VGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKAN 112
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.32
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Frame = +1
Query: 49 KFRMGKHFGELGFIRGIVY---YKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAI 219
++ + F E G IR Y YK+ GA+ KG+P+ + Y + +
Sbjct: 12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSS 71
Query: 220 IGTCIYK-----YVEE-----AHHASLRKDPRDFMDEVDPN 312
+G IYK Y+E+ H K +DF+D V N
Sbjct: 72 VGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKAN 112
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 3.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +3
Query: 135 LCWCNYKRNPQFCDKNASNNC 197
LCWC + P+F ++C
Sbjct: 258 LCWCGKQEKPEFVKNLVPHSC 278
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 3.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 53 SEWENISVNWVSLEE 97
SEWE S+NW L++
Sbjct: 329 SEWEQHSLNWAKLDD 343
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 327 NKTLNVRINFIHKVPWVFSQR 265
N TL +HKVPW SQR
Sbjct: 6 NSTLARFGGLVHKVPWRLSQR 26
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 321 TLNVRINFIHKVPWVFSQRCMMRFFDIFV 235
T RINF W+ R ++ FF +F+
Sbjct: 462 TTRERINFPELNEWITLHRFVISFFTVFI 490
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 168 FCDKNASNNCVLVTTCNNRNMYLQICRRSASCI 266
FC+ S +C L N++ +IC +S C+
Sbjct: 27 FCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCL 59
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 47 ENSEWENISVNWVSLE---ELFIIKCLHMNKKP 136
+N E + N S E E F+ +C HMN++P
Sbjct: 23 DNDHKEELINNQKSFESNVEAFMEQCAHMNRRP 55
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 11 LIKEKVVLNLIKENSEWENIS 73
LIK KV + + K ++E++NI+
Sbjct: 2043 LIKSKVAIRVSKTSTEYDNIT 2063
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 23.8 bits (49), Expect = 9.1
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = +2
Query: 338 YFDPIHWRK 364
+FDPIHW++
Sbjct: 146 FFDPIHWKR 154
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 138 IGFLFMWRHFIINNSSNETQFTE 70
+GF+ FI+N S N++ TE
Sbjct: 9 VGFICFLHFFIVNASDNKSLLTE 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,748
Number of Sequences: 5004
Number of extensions: 30284
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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