Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d19
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081...    33   0.099
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           28   2.1  
04_03_0735 + 19141038-19143227                                         27   4.9  
04_04_1345 + 32792879-32794207                                         27   6.5  

>04_04_1273 -
           32307273-32307569,32307659-32307791,32307874-32308105,
           32308220-32308436,32308594-32308718,32309416-32310757
          Length = 781

 Score = 32.7 bits (71), Expect = 0.099
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -1

Query: 297 IHKVPWVFSQRCMMRFFDIFVDTCSDYCRW*PVRNCC*HSCHKIGDSFCNCTSIGF 130
           + ++ WV S R   RFF    D C  Y R  P   C          SFC C   GF
Sbjct: 282 VERLVWVASSRAWQRFFQGPRDPCDSYARCGPFGLC---DADAAATSFCGCVD-GF 333


>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 129 KSLCWCNYKRNPQFCDKNASNNCVLV 206
           K L W ++  NP+   +N S+ C+L+
Sbjct: 432 KGLAWLHHSCNPRILHRNISSKCILL 457


>04_03_0735 + 19141038-19143227
          Length = 729

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 336 FTINKTLNVRINFIHKVPWVFSQRCMMRFFDIFVDTCSDYCRW*P 202
           + I++T+N+   F HKV W    R ++R      DT + Y  W P
Sbjct: 574 YQISETVNI---FSHKVSWTKGPRGIIRIVPQKGDTWALYRNWSP 615


>04_04_1345 + 32792879-32794207
          Length = 442

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 229 CIYKYVEEAHHASLRKDPRDF 291
           C ++ V+EAHH    KDP  F
Sbjct: 153 CDHRRVDEAHHLCFGKDPPPF 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,317,194
Number of Sequences: 37544
Number of extensions: 177854
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)