Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d18
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    29   0.54 
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    27   2.2  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    27   2.2  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   3.8  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   3.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   6.6  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   8.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.7  
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    25   8.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.7  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   8.7  

>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 30/94 (31%), Positives = 42/94 (44%)
 Frame = +2

Query: 218 NQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMKSGIKD 397
           N  K +TL      LRL  EK+    D  W LF     S   E C R FP   + +GI  
Sbjct: 182 NTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHIS-ALELCTRMFPGIPIMAGIFA 240

Query: 398 MDELLSVITDVPALDLVLQQLDNLEALPNISDII 499
            ++      + P L+L L+++ NL     IS I+
Sbjct: 241 DEKCF----EKPMLNL-LERILNLLQCKYISSIL 269


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/74 (17%), Positives = 37/74 (50%)
 Frame = +2

Query: 443 LVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMANTMTTPSKPQH 622
           +++  +++  A+  I D   L+F+V ++  + T+K     ++       NT+  P+  + 
Sbjct: 61  IIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKK 120

Query: 623 IFQVISSNKSTVEL 664
            F  +S++   +++
Sbjct: 121 AFVKLSADADALDV 134


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 419 ITDVPALD---LVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMA 589
           +   P LD   +++  +++  A+  I D   L+F+V ++  + T+K     ++       
Sbjct: 50  VAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKI 109

Query: 590 NTMTTPSKPQHIFQVISSNKSTVEL 664
           NT+  P+  +  F  +S++   +++
Sbjct: 110 NTLIRPNGTKKAFVKLSADADALDV 134


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 201 SDTEAILQLVPVSDNTSCSL 142
           S+T AI+Q+VP S+NT  S+
Sbjct: 277 SETNAIIQVVPFSENTLLSV 296


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +2

Query: 317 VAAAFSFRYESCLRPFPPAF---MKSGIKDMDELLSVITDVPALDLVLQQLDNLEALPNI 487
           V   F    +  LR   P+F   M    KD+D  LSV TD     +V   L+   ++  I
Sbjct: 462 VGRTFEESLQKALRQVDPSFLGFMAMPFKDLDNALSVPTDRRFFAVVEAMLNQGYSIDKI 521

Query: 488 SDIIDLLFYVLVRL 529
            D+  +  + L +L
Sbjct: 522 HDLTKIDKWFLSKL 535


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 200 ETMSDINQTKLDTLEKKAVHLRLVLEK 280
           E   DI++TKLDTL  +     L+LEK
Sbjct: 535 EFTDDIHRTKLDTLLTQVRPKELILEK 561


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 209 TLSLIPRLYYNWYPFLITPRALSPFYE*TNIAF 111
           T +++ +  YN+YPF++ P A   F + T+  F
Sbjct: 807 TKAMVEKGVYNYYPFIV-PNANHEFSDPTDYTF 838


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 297  SAALKSFSKTSLR*TAFFSKVSNLV*LISDIVSDTEAILQL-VPVSDN 157
            S ALK  + T+L   A   K+S  V  + +  S T+AI  L +P++D+
Sbjct: 1720 SVALKELNATNLLQKAALHKISRFVNALCNEESLTDAICNLPLPLADS 1767


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 161 SETGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEKD 283
           +E   NC +  +S T  D   + LD +  +  H+R ++  D
Sbjct: 33  AEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPD 73


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 527  LKEPTLKTVPT-DVHEQILAMANTMTTPSKPQHIFQVISSNKSTVELKWKELSKNH 691
            L + +LK +   ++HE +L   + +    K     Q+       V+  ++ELSK H
Sbjct: 1143 LSDASLKYIELQEIHENLLLKVSDLENYKKKYEGLQLDLEGLKDVDTNFQELSKKH 1198


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 392 KDMDELLSVITDVPALDLVLQQLDNLEALPN 484
           K  +ELL  I   PA+   LQQ D  E   N
Sbjct: 295 KKNEELLRTIDKAPAISKKLQQKDKAEKFSN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,883
Number of Sequences: 5004
Number of extensions: 61651
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)