Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d14
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0794 + 23206796-23207590,23207620-23208148,23208444-232084...    32   0.52 
01_01_0220 + 1866989-1868393,1868465-1869153                           30   1.6  
09_06_0288 - 22051412-22051515,22051572-22052103                       29   4.8  
05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324...    28   6.4  

>12_02_0794 +
           23206796-23207590,23207620-23208148,23208444-23208468,
           23208775-23208837,23209136-23209157,23209369-23209482
          Length = 515

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 605 EFIIESQFASEFFLYVIRIASMAPSSASTEPPADRFV-GLGHDDQDEY 465
           EF++   F  ++F+Y    +  A SS +  PP   F+ G   DD+D Y
Sbjct: 108 EFVVPGYFPVDYFVYTAGASGAASSSLTRLPPC--FIGGAAPDDEDHY 153


>01_01_0220 + 1866989-1868393,1868465-1869153
          Length = 697

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 511 GGSVDADEGAIEAIRITY-KKNSLANWDSIMNSPP 612
           GGS+DAD  A+   R+   +  +LA+WD   N  P
Sbjct: 35  GGSLDADVAALSDFRLAADRSGALASWDLAANPAP 69


>09_06_0288 - 22051412-22051515,22051572-22052103
          Length = 211

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 109 AMFSNPPPSNIIDDEDIKVHTEIIILNVAQDDQPRVPPEV 228
           AM++ PPP    D +D    T II       D+  + PEV
Sbjct: 109 AMYTAPPPLRSSDGDDDDAATTIITTRAGPVDEHNLQPEV 148


>05_07_0293 +
           29031318-29031812,29032096-29032158,29032365-29032490,
           29032783-29032911,29033161-29033311,29033853-29033962,
           29034502-29034607,29034697-29034894,29034988-29035030,
           29035129-29035207
          Length = 499

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 124 PPPS--NIIDDEDIKVHTEIIILNVAQDDQPRVPPEVSNLQPV*SGRNSFYLCS 279
           PPP+   + ++E+      + +L   Q+D P  PPEV NL P    R S   CS
Sbjct: 54  PPPAAEEVGEEEEDDDAPPLRLLEPPQEDDP-FPPEVLNLFPPSCFRCSHLFCS 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,828,077
Number of Sequences: 37544
Number of extensions: 363052
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)